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  5. LOC_Os12g31000.1

LOC_Os12g31000.1


Description : Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana (sp|q9c9r6|pum7_arath : 374.0)


Gene families : OG0000964 (Archaeplastida) Phylogenetic Tree(s): OG0000964_tree ,
OG_05_0000819 (LandPlants) Phylogenetic Tree(s): OG_05_0000819_tree ,
OG_06_0001861 (SeedPlants) Phylogenetic Tree(s): OG_06_0001861_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g31000.1
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Zm00001e039642_P002 No alias no hits & (original description: none) 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006772 thiamine metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009228 thiamine biosynthetic process IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042723 thiamine-containing compound metabolic process IEP Neighborhood
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 314 347
IPR001313 Pumilio_RNA-bd_rpt 282 310
IPR001313 Pumilio_RNA-bd_rpt 241 270
IPR001313 Pumilio_RNA-bd_rpt 392 409
No external refs found!