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  5. LOC_Os12g31800.1

LOC_Os12g31800.1


Description : RNA editing factor (ORRM)


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000394 (LandPlants) Phylogenetic Tree(s): OG_05_0000394_tree ,
OG_06_0000412 (SeedPlants) Phylogenetic Tree(s): OG_06_0000412_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g31800.1
Cluster HCCA: Cluster_298

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00251200 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00025p00095750 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00148p00072380 evm_27.TU.AmTr_v1... 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.03 Archaeplastida
AMTR_s00154p00024620 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AT3G26420 ATRZ-1A RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.05 Archaeplastida
AT5G19030 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
AT5G50250 CP31B chloroplast RNA-binding protein 31B 0.06 Archaeplastida
GSVIVT01017884001 No alias No description available 0.08 Archaeplastida
MA_10436424g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
MA_320479g0010 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.03 Archaeplastida
Pp3c17_4050V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.04 Archaeplastida
Smo172546 No alias Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana 0.02 Archaeplastida
Smo81392 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
Solyc01g104840.4.1 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
Solyc02g088790.3.1 No alias RNA editing factor (ORRM) 0.04 Archaeplastida
Solyc10g051377.1.1 No alias RNA chaperone (RZ1|GR-RBP) 0.04 Archaeplastida
Solyc10g081180.2.1 No alias RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.03 Archaeplastida
Solyc10g086150.2.1 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.02 Archaeplastida
Solyc11g008210.3.1 No alias Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e001824_P002 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e005260_P002 No alias RNA chaperone (RZ1|GR-RBP) 0.08 Archaeplastida
Zm00001e010844_P001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
Zm00001e011440_P001 No alias RNA chaperone (RZ1|GR-RBP) 0.08 Archaeplastida
Zm00001e018330_P004 No alias RNA editing factor (ORRM) 0.17 Archaeplastida
Zm00001e033010_P001 No alias RNA chaperone (RZ1|GR-RBP) 0.05 Archaeplastida
Zm00001e035630_P001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
Zm00001e039608_P001 No alias RNA editing factor (ORRM) 0.12 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 33 103
No external refs found!