LOC_Os12g35400.1

Description : no hits & (original description: none)

Gene families : OG0000538 (Archaeplastida) Phylogenetic Tree(s): OG0000538_tree ,
OG_05_0000814 (LandPlants) Phylogenetic Tree(s): OG_05_0000814_tree ,
OG_06_0000441 (SeedPlants) Phylogenetic Tree(s): OG_06_0000441_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os12g35400.1
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os01g14200.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os01g37580.1	No alias	Replication protein A 70 kDa DNA-binding subunit B...	0.05	Archaeplastida
LOC_Os01g43980.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os02g16300.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os02g24090.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os02g47340.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os05g28260.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os07g02230.1	No alias	Replication protein A 70 kDa DNA-binding subunit B...	0.04	Archaeplastida
LOC_Os10g22130.1	No alias	no hits & (original description: none)	0.06	Archaeplastida
LOC_Os11g12580.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os11g44830.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os12g06230.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os12g26850.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os12g32690.1	No alias	no hits & (original description: none)	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060249	anatomical structure homeostasis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008234	cysteine-type peptidase activity	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR010285	DNA_helicase_pif1-like	1	106
IPR010285	DNA_helicase_pif1-like	107	207

External Links

No external refs found!

LOC_Os12g35400.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation