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- Species
- Oryza sativa
- Sequence
- LOC_Os12g36620.1
LOC_Os12g36620.1
Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 946.0)
Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_treeExpression Profile
Attention: This gene has low abundance.
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Expression Context Conservation (ECC)
Target Alias Description ECC score Gene Family Method Actions AMTR_s00010p00228270 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida AMTR_s00022p00023600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g50270... 0.05 Archaeplastida AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.02 Archaeplastida AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.02 Archaeplastida GSVIVT01015461001 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida LOC_Os05g12130.1 No alias RNA editing factor (ECD1) 0.03 Archaeplastida LOC_Os05g23960.1 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida LOC_Os05g49920.1 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida LOC_Os07g07620.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.05 Archaeplastida Smo105356 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida Smo11486 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 Archaeplastida Smo118039 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida Smo442088 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.02 Archaeplastida Smo51483 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.02 Archaeplastida Smo78179 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Archaeplastida Smo94907 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.01 Archaeplastida
Functional Annotation
Type GO Term Name Evidence Source MF GO:0003674 molecular_function None Extended MF GO:0005488 binding None Extended MF GO:0008270 zinc ion binding IEA Interproscan MF GO:0043167 ion binding None Extended MF GO:0043169 cation binding None Extended MF GO:0046872 metal ion binding None Extended MF GO:0046914 transition metal ion binding None Extended Type GO Term Name Evidence Source No Predicted GO terms available for this sequence
InterPro domains Description Start Stop IPR002885 Pentatricopeptide_repeat 81 103 IPR002885 Pentatricopeptide_repeat 483 509 IPR002885 Pentatricopeptide_repeat 284 303 IPR002885 Pentatricopeptide_repeat 687 710 IPR002885 Pentatricopeptide_repeat 182 206 IPR002885 Pentatricopeptide_repeat 208 255 IPR002885 Pentatricopeptide_repeat 510 556 IPR002885 Pentatricopeptide_repeat 612 658 IPR002885 Pentatricopeptide_repeat 309 355 IPR002885 Pentatricopeptide_repeat 107 154 IPR002885 Pentatricopeptide_repeat 409 456 IPR032867 DYW_dom 785 878 External LinksNo external refs found! Loading ... please wait ...