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  5. LOC_Os12g36620.1

LOC_Os12g36620.1


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 946.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g36620.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00228270 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00022p00023600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g50270... 0.05 Archaeplastida
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.02 Archaeplastida
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.02 Archaeplastida
GSVIVT01015461001 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
LOC_Os05g12130.1 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
LOC_Os05g23960.1 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
LOC_Os05g49920.1 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
LOC_Os07g07620.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.05 Archaeplastida
Smo105356 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida
Smo11486 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 Archaeplastida
Smo118039 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Smo442088 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.02 Archaeplastida
Smo51483 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.02 Archaeplastida
Smo78179 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Archaeplastida
Smo94907 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 81 103
IPR002885 Pentatricopeptide_repeat 483 509
IPR002885 Pentatricopeptide_repeat 284 303
IPR002885 Pentatricopeptide_repeat 687 710
IPR002885 Pentatricopeptide_repeat 182 206
IPR002885 Pentatricopeptide_repeat 208 255
IPR002885 Pentatricopeptide_repeat 510 556
IPR002885 Pentatricopeptide_repeat 612 658
IPR002885 Pentatricopeptide_repeat 309 355
IPR002885 Pentatricopeptide_repeat 107 154
IPR002885 Pentatricopeptide_repeat 409 456
IPR032867 DYW_dom 785 878
No external refs found!