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  5. LOC_Os12g37100.1

LOC_Os12g37100.1


Description : Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Arabidopsis thaliana (sp|q9lsq2|pp239_arath : 595.0)


Gene families : OG0011343 (Archaeplastida) Phylogenetic Tree(s): OG0011343_tree ,
OG_05_0011199 (LandPlants) Phylogenetic Tree(s): OG_05_0011199_tree ,
OG_06_0010465 (SeedPlants) Phylogenetic Tree(s): OG_06_0010465_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g37100.1
Cluster HCCA: Cluster_312

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00184190 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_40070 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Zm00001e002867_P004 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 331 358
IPR002885 Pentatricopeptide_repeat 501 550
IPR002885 Pentatricopeptide_repeat 432 480
IPR002885 Pentatricopeptide_repeat 575 620
IPR002885 Pentatricopeptide_repeat 217 250
IPR002885 Pentatricopeptide_repeat 253 285
No external refs found!