LOC_Os12g38210.1

Description : E3 ubiquitin ligase (PUB)

Gene families : OG0000227 (Archaeplastida) Phylogenetic Tree(s): OG0000227_tree ,
OG_05_0000670 (LandPlants) Phylogenetic Tree(s): OG_05_0000670_tree ,
OG_06_0001036 (SeedPlants) Phylogenetic Tree(s): OG_06_0001036_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os12g38210.1
Cluster	HCCA: Cluster_314

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00030110	evm_27.TU.AmTr_v1...	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00072p00171260	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
AT1G29340	ATPUB17, PUB17	plant U-box 17	0.04	Archaeplastida
AT3G46510	PUB13, ATPUB13	plant U-box 13	0.05	Archaeplastida
AT3G54850	PUB14, ATPUB14	plant U-box 14	0.02	Archaeplastida
AT5G42340	PUB15	Plant U-Box 15	0.04	Archaeplastida
GSVIVT01016225001	No alias	U-box domain-containing protein 14 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01021265001	No alias	U-box domain-containing protein 17 OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_08792	No alias	U-box domain-containing protein 1 OS=Medicago truncatula...	0.03	Archaeplastida
Gb_13754	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
LOC_Os02g49950.1	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
LOC_Os03g16824.1	No alias	E3 ubiquitin ligase (PUB)	0.04	Archaeplastida
MA_10426688g0010	No alias	U-box domain-containing protein 1 OS=Medicago truncatula...	0.02	Archaeplastida
MA_27512g0010	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Mp5g12560.1	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
Pp3c20_8020V3.1	No alias	plant U-box 13	0.02	Archaeplastida
Pp3c23_8770V3.1	No alias	plant U-box 14	0.04	Archaeplastida
Smo181353	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
Smo231208	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
Smo415326	No alias	U-box domain-containing protein 1 OS=Medicago truncatula	0.03	Archaeplastida
Solyc02g072080.1.1	No alias	U-box domain-containing protein 17 OS=Arabidopsis...	0.06	Archaeplastida
Solyc04g082440.4.1	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.02	Archaeplastida
Solyc11g008390.2.1	No alias	E3 ubiquitin ligase (PUB)	0.08	Archaeplastida
Solyc12g094610.3.1	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e001226_P001	No alias	E3 ubiquitin ligase (PUB)	0.01	Archaeplastida
Zm00001e002954_P001	No alias	E3 ubiquitin ligase (PUB)	0.07	Archaeplastida
Zm00001e018161_P001	No alias	E3 ubiquitin ligase (PUB)	0.06	Archaeplastida
Zm00001e036734_P001	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0003993	acid phosphatase activity	IEP	Neighborhood
MF	GO:0003997	acyl-CoA oxidase activity	IEP	Neighborhood
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
CC	GO:0005777	peroxisome	IEP	Neighborhood
CC	GO:0005795	Golgi stack	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006635	fatty acid beta-oxidation	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Neighborhood
BP	GO:0007186	G-protein coupled receptor signaling pathway	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Neighborhood
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Neighborhood
MF	GO:0008455	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	IEP	Neighborhood
BP	GO:0009062	fatty acid catabolic process	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016042	lipid catabolic process	IEP	Neighborhood
BP	GO:0016054	organic acid catabolic process	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016791	phosphatase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
BP	GO:0019395	fatty acid oxidation	IEP	Neighborhood
CC	GO:0030120	vesicle coat	IEP	Neighborhood
CC	GO:0030127	COPII vesicle coat	IEP	Neighborhood
BP	GO:0030258	lipid modification	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0031683	G-protein beta/gamma-subunit complex binding	IEP	Neighborhood
CC	GO:0031984	organelle subcompartment	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0034440	lipid oxidation	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0040008	regulation of growth	IEP	Neighborhood
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Neighborhood
CC	GO:0042579	microbody	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
MF	GO:0043531	ADP binding	IEP	Neighborhood
BP	GO:0044242	cellular lipid catabolic process	IEP	Neighborhood
BP	GO:0044282	small molecule catabolic process	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
CC	GO:0044433	cytoplasmic vesicle part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
MF	GO:0044877	protein-containing complex binding	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0045927	positive regulation of growth	IEP	Neighborhood
BP	GO:0046395	carboxylic acid catabolic process	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
CC	GO:0098791	Golgi subcompartment	IEP	Neighborhood
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	280	318
IPR000225	Armadillo	321	359
IPR000225	Armadillo	363	400
IPR003613	Ubox_domain	154	224

External Links

No external refs found!

LOC_Os12g38210.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation