AMTR_s00012p00198620 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00012.131

Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000133 (Archaeplastida) Phylogenetic Tree(s): OG0000133_tree ,
OG_05_0000245 (LandPlants) Phylogenetic Tree(s): OG_05_0000245_tree ,
OG_06_0001075 (SeedPlants) Phylogenetic Tree(s): OG_06_0001075_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00012p00198620
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AT2G28470 BGAL8 beta-galactosidase 8 0.02 Archaeplastida
GSVIVT01005849001 No alias Beta-galactosidase 6 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
MA_207283g0010 No alias Beta-galactosidase 8 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_87238g0010 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Solyc02g084720.3.1 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
Zm00001e019757_P001 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0030246 carbohydrate binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR000922 Lectin_gal-bd_dom 598 676
IPR001944 Glycoside_Hdrlase_35 31 198
IPR001944 Glycoside_Hdrlase_35 206 270
No external refs found!