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  5. LOC_Os12g39850.1

LOC_Os12g39850.1


Description : transcription factor (bHLH)


Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0000040 (LandPlants) Phylogenetic Tree(s): OG_05_0000040_tree ,
OG_06_0000031 (SeedPlants) Phylogenetic Tree(s): OG_06_0000031_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g39850.1
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00265010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.05 Archaeplastida
AT1G27740 RSL4 root hair defective 6-like 4 0.08 Archaeplastida
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.05 Archaeplastida
AT2G14760 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT2G46970 PIL1 phytochrome interacting factor 3-like 1 0.04 Archaeplastida
AT3G21330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.07 Archaeplastida
AT3G59060 PIL6, PIF5 phytochrome interacting factor 3-like 6 0.03 Archaeplastida
AT4G33880 RSL2 ROOT HAIR DEFECTIVE 6-LIKE 2 0.05 Archaeplastida
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.05 Archaeplastida
AT5G43175 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 Archaeplastida
GSVIVT01028238001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
GSVIVT01028516001 No alias External stimuli response.light.red/far red light.PIF... 0.03 Archaeplastida
Gb_27869 No alias transcription factor (bHLH) 0.03 Archaeplastida
Gb_30839 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os01g02110.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os07g39940.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os09g28210.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_100071g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_10156436g0010 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_78485g0010 No alias transcription factor (bHLH) 0.02 Archaeplastida
MA_83500g0010 No alias transcription factor (bHLH) 0.05 Archaeplastida
MA_88831g0010 No alias transcription factor (bHLH) 0.02 Archaeplastida
Pp3c10_19020V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c14_20740V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c17_21890V3.1 No alias phytochrome interacting factor 3 0.02 Archaeplastida
Pp3c1_38820V3.1 No alias phytochrome interacting factor 3 0.02 Archaeplastida
Smo409967 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Smo413232 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.12 Archaeplastida
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.1 Archaeplastida
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.12 Archaeplastida
Solyc12g088790.3.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e006917_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e015610_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e019392_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e025656_P001 No alias transcription factor (bHLH) 0.12 Archaeplastida
Zm00001e027758_P002 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.16 Archaeplastida
Zm00001e038765_P001 No alias transcription factor (bHLH) 0.16 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
CC GO:0030286 dynein complex IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0120009 intermembrane lipid transfer IEP Neighborhood
MF GO:0120013 intermembrane lipid transfer activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 232 272
No external refs found!