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Description : TRAF1 endomembrane trafficking ATG6-stability regulator protein
Gene families : OG0001944 (Archaeplastida) Phylogenetic Tree(s): OG0001944_tree ,
OG_05_0002285 (LandPlants) Phylogenetic Tree(s): OG_05_0002285_tree ,
OG_06_0002760 (SeedPlants) Phylogenetic Tree(s): OG_06_0002760_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os12g40520.1 | |
| Cluster | HCCA: Cluster_297 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre12.g494000 | No alias | Vesicle trafficking.endomembrane trafficking.PI3-kinase... | 0.02 | Archaeplastida | |
| GSVIVT01018133001 | No alias | Vesicle trafficking.endomembrane trafficking.PI3-kinase... | 0.04 | Archaeplastida | |
| MA_10434493g0010 | No alias | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.03 | Archaeplastida | |
| Mp8g14880.1 | No alias | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.07 | Archaeplastida | |
| Pp3c12_900V3.1 | No alias | TRAF-like superfamily protein | 0.05 | Archaeplastida | |
| Pp3c17_710V3.1 | No alias | TRAF-like superfamily protein | 0.08 | Archaeplastida | |
| Solyc03g005430.4.1 | No alias | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.05 | Archaeplastida | |
| Zm00001e003140_P001 | No alias | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.07 | Archaeplastida | |
| Zm00001e018034_P004 | No alias | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.02 | Archaeplastida | |
| Zm00001e027387_P004 | No alias | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.05 | Archaeplastida | |
| Zm00001e032087_P004 | No alias | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.06 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
| CC | GO:0005685 | U1 snRNP | IEP | Neighborhood |
| BP | GO:0006260 | DNA replication | IEP | Neighborhood |
| BP | GO:0006376 | mRNA splice site selection | IEP | Neighborhood |
| BP | GO:0006479 | protein methylation | IEP | Neighborhood |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Neighborhood |
| MF | GO:0008170 | N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0008213 | protein alkylation | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| MF | GO:0008276 | protein methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Neighborhood |
| MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Neighborhood |
| MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
| BP | GO:0016570 | histone modification | IEP | Neighborhood |
| BP | GO:0016571 | histone methylation | IEP | Neighborhood |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Neighborhood |
| MF | GO:0017069 | snRNA binding | IEP | Neighborhood |
| MF | GO:0017070 | U6 snRNA binding | IEP | Neighborhood |
| BP | GO:0018022 | peptidyl-lysine methylation | IEP | Neighborhood |
| MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | Neighborhood |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Neighborhood |
| MF | GO:0030623 | U5 snRNA binding | IEP | Neighborhood |
| MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Neighborhood |
| BP | GO:0034968 | histone lysine methylation | IEP | Neighborhood |
| MF | GO:0042054 | histone methyltransferase activity | IEP | Neighborhood |
| MF | GO:0043169 | cation binding | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043414 | macromolecule methylation | IEP | Neighborhood |
| MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044428 | nuclear part | IEP | Neighborhood |
| MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| BP | GO:0051169 | nuclear transport | IEP | Neighborhood |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | Neighborhood |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002083 | MATH/TRAF_dom | 76 | 193 |
| No external refs found! |