1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os12g40730.1

LOC_Os12g40730.1


Description : transcription factor (bHLH)


Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0082398 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0029596 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g40730.1
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.03 Archaeplastida
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.03 Archaeplastida
GSVIVT01018164001 No alias Transcription factor UNE10 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01018165001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
GSVIVT01028516001 No alias External stimuli response.light.red/far red light.PIF... 0.03 Archaeplastida
GSVIVT01037846001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
LOC_Os03g56950.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 Archaeplastida
LOC_Os05g46370.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
MA_29186g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c14_16620V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c25_13740V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c3_8460V3.1 No alias ROOT HAIR DEFECTIVE 6-LIKE 2 0.02 Archaeplastida
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e025656_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004356 glutamate-ammonia ligase activity IEP Neighborhood
MF GO:0004556 alpha-amylase activity IEP Neighborhood
BP GO:0006541 glutamine metabolic process IEP Neighborhood
BP GO:0006542 glutamine biosynthetic process IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0008272 sulfate transport IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Neighborhood
MF GO:0015116 sulfate transmembrane transporter activity IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016211 ammonia ligase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
BP GO:0072348 sulfur compound transport IEP Neighborhood
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 169 208
No external refs found!