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  5. LOC_Os12g41140.1

LOC_Os12g41140.1


Description : VAN3-binding protein OS=Arabidopsis thaliana (sp|q8w4k5|vab_arath : 191.0)


Gene families : OG0001229 (Archaeplastida) Phylogenetic Tree(s): OG0001229_tree ,
OG_05_0000856 (LandPlants) Phylogenetic Tree(s): OG_05_0000856_tree ,
OG_06_0001397 (SeedPlants) Phylogenetic Tree(s): OG_06_0001397_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g41140.1
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AT4G17350 No alias Plant protein of unknown function (DUF828) with plant... 0.04 Archaeplastida
AT5G43870 No alias Plant protein of unknown function (DUF828) with plant... 0.04 Archaeplastida
Smo268691 No alias VAN3-binding protein OS=Arabidopsis thaliana 0.03 Archaeplastida
Smo269293 No alias VAN3-binding protein OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc08g078500.3.1 No alias VAN3-binding protein OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc09g065590.3.1 No alias VAN3-binding protein OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc09g082580.4.1 No alias VAN3-binding protein OS=Arabidopsis thaliana... 0.01 Archaeplastida
Zm00001e005060_P001 No alias VAN3-binding protein OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e012419_P002 No alias VAN3-binding protein OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013666 PH_pln 367 470
IPR008546 DUF828 19 300
No external refs found!