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  5. LOC_Os12g41715.1

LOC_Os12g41715.1


Description : RNA helicase (PMH)


Gene families : OG0000607 (Archaeplastida) Phylogenetic Tree(s): OG0000607_tree ,
OG_05_0000974 (LandPlants) Phylogenetic Tree(s): OG_05_0000974_tree ,
OG_06_0003526 (SeedPlants) Phylogenetic Tree(s): OG_06_0003526_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g41715.1
Cluster HCCA: Cluster_350

Target Alias Description ECC score Gene Family Method Actions
AT3G22310 PMH1, ATRH9 putative mitochondrial RNA helicase 1 0.05 Archaeplastida
Cpa|evm.model.tig00000093.151 No alias DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays 0.01 Archaeplastida
Gb_35745 No alias RH3 plastidial RNA basal splicing factor 0.03 Archaeplastida
Solyc07g044760.3.1 No alias RNA helicase (PMH) 0.02 Archaeplastida
Solyc12g006320.3.1 No alias RNA helicase (PMH) 0.02 Archaeplastida
Zm00001e003219_P001 No alias RNA helicase (PMH) 0.06 Archaeplastida
Zm00001e006243_P001 No alias RH3 plastidial RNA basal splicing factor 0.02 Archaeplastida
Zm00001e011716_P001 No alias RH3 plastidial RNA basal splicing factor 0.03 Archaeplastida
Zm00001e018107_P001 No alias RNA helicase (PMH) 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 328 436
IPR011545 DEAD/DEAH_box_helicase_dom 122 290
No external refs found!