1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os12g41860.1

LOC_Os12g41860.1


Description : transcription factor (HD-ZIP III)


Gene families : OG0000862 (Archaeplastida) Phylogenetic Tree(s): OG0000862_tree ,
OG_05_0000983 (LandPlants) Phylogenetic Tree(s): OG_05_0000983_tree ,
OG_06_0000998 (SeedPlants) Phylogenetic Tree(s): OG_06_0000998_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g41860.1
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00085520 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
AMTR_s00148p00033940 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.08 Archaeplastida
AMTR_s00155p00069240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.08 Archaeplastida
AT2G34710 PHB-1D, ATHB-14,... Homeobox-leucine zipper family protein / lipid-binding... 0.04 Archaeplastida
AT4G32880 HB-8, ATHB8, ATHB-8 homeobox gene 8 0.05 Archaeplastida
AT5G60690 IFL1, IFL, REV Homeobox-leucine zipper family protein / lipid-binding... 0.04 Archaeplastida
GSVIVT01017010001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01021625001 No alias RNA biosynthesis.transcriptional activation.HB... 0.08 Archaeplastida
GSVIVT01025193001 No alias RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
Gb_02083 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
Gb_10259 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
Gb_18245 No alias transcription factor (HD-ZIP III) 0.04 Archaeplastida
MA_10427484g0010 No alias transcription factor (HD-ZIP III) 0.02 Archaeplastida
Mp1g24140.1 No alias transcription factor (HD-ZIP III) 0.02 Archaeplastida
Pp3c10_19630V3.1 No alias Homeobox-leucine zipper family protein / lipid-binding... 0.02 Archaeplastida
Pp3c16_15450V3.1 No alias Homeobox-leucine zipper family protein / lipid-binding... 0.02 Archaeplastida
Pp3c3_30010V3.1 No alias homeobox gene 8 0.02 Archaeplastida
Pp3c4_5300V3.1 No alias homeobox gene 8 0.03 Archaeplastida
Smo77000 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Solyc02g024070.3.1 No alias transcription factor (HD-ZIP III) 0.08 Archaeplastida
Solyc03g120910.4.1 No alias transcription factor (HD-ZIP III) 0.04 Archaeplastida
Solyc08g066500.4.1 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
Solyc11g069470.3.1 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
Solyc12g044410.2.1 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
Zm00001e000073_P001 No alias transcription factor (HD-ZIP III) 0.06 Archaeplastida
Zm00001e003226_P004 No alias transcription factor (HD-ZIP III) 0.05 Archaeplastida
Zm00001e004553_P004 No alias transcription factor (HD-ZIP III) 0.11 Archaeplastida
Zm00001e005034_P001 No alias transcription factor (HD-ZIP III) 0.09 Archaeplastida
Zm00001e012408_P002 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
Zm00001e018118_P002 No alias transcription factor (HD-ZIP III) 0.1 Archaeplastida
Zm00001e025995_P002 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
Zm00001e039093_P002 No alias transcription factor (HD-ZIP III) 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0008289 lipid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013978 MEKHLA 712 854
IPR002913 START_lipid-bd_dom 178 385
IPR001356 Homeobox_dom 30 87
No external refs found!