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  5. LOC_Os12g42120.1

LOC_Os12g42120.1


Description : Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana (sp|q9fix3|pp407_arath : 272.0)


Gene families : OG0009116 (Archaeplastida) Phylogenetic Tree(s): OG0009116_tree ,
OG_05_0008968 (LandPlants) Phylogenetic Tree(s): OG_05_0008968_tree ,
OG_06_0005695 (SeedPlants) Phylogenetic Tree(s): OG_06_0005695_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g42120.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT1G30290 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
GSVIVT01021547001 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.06 Archaeplastida
Gb_28559 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.03 Archaeplastida
Solyc08g023490.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 195 243
IPR002885 Pentatricopeptide_repeat 373 420
IPR002885 Pentatricopeptide_repeat 546 594
IPR002885 Pentatricopeptide_repeat 265 315
IPR002885 Pentatricopeptide_repeat 168 193
IPR002885 Pentatricopeptide_repeat 444 474
IPR002885 Pentatricopeptide_repeat 336 364
IPR002885 Pentatricopeptide_repeat 507 539
No external refs found!