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  5. LOC_Os12g42190.1

LOC_Os12g42190.1


Description : transcription factor (TCP)


Gene families : OG0000332 (Archaeplastida) Phylogenetic Tree(s): OG0000332_tree ,
OG_05_0000167 (LandPlants) Phylogenetic Tree(s): OG_05_0000167_tree ,
OG_06_0000105 (SeedPlants) Phylogenetic Tree(s): OG_06_0000105_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g42190.1
Cluster HCCA: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00158020 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TCP... 0.04 Archaeplastida
AMTR_s00154p00072430 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TCP... 0.03 Archaeplastida
AT3G18550 BRC1, ATTCP18, TCP18 TCP family transcription factor 0.03 Archaeplastida
GSVIVT01008109001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.04 Archaeplastida
GSVIVT01032911001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.04 Archaeplastida
Gb_30049 No alias transcription factor (TCP) 0.02 Archaeplastida
Gb_38376 No alias transcription factor (TCP) 0.03 Archaeplastida
Gb_38379 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os07g05720.1 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_101752g0020 No alias transcription factor (TCP) 0.02 Archaeplastida
MA_15254g0010 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_189502g0010 No alias transcription factor (TCP) 0.04 Archaeplastida
MA_78665g0010 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc02g077250.2.1 No alias transcription factor (TCP) 0.04 Archaeplastida
Solyc03g045030.2.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc03g115010.3.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc04g006980.1.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Solyc06g069240.2.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e005407_P001 No alias transcription factor (TCP) 0.02 Archaeplastida
Zm00001e011911_P001 No alias transcription factor (TCP) 0.07 Archaeplastida
Zm00001e012216_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e019734_P001 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e022442_P001 No alias transcription factor (TCP) 0.02 Archaeplastida
Zm00001e032122_P001 No alias transcription factor (TCP) 0.02 Archaeplastida
Zm00001e032821_P001 No alias transcription factor (TCP) 0.09 Archaeplastida
Zm00001e035648_P002 No alias transcription factor (TCP) 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Neighborhood
MF GO:0015020 glucuronosyltransferase activity IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 45 174
No external refs found!