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  5. LOC_Os12g42840.1

LOC_Os12g42840.1


Description : no hits & (original description: none)


Gene families : OG0006818 (Archaeplastida) Phylogenetic Tree(s): OG0006818_tree ,
OG_05_0006105 (LandPlants) Phylogenetic Tree(s): OG_05_0006105_tree ,
OG_06_0006166 (SeedPlants) Phylogenetic Tree(s): OG_06_0006166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g42840.1
Cluster HCCA: Cluster_319

Target Alias Description ECC score Gene Family Method Actions
AT5G06590 No alias unknown protein; Has 38 Blast hits to 38 proteins in 14... 0.03 Archaeplastida
GSVIVT01022502001 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.04 Archaeplastida
Gb_14097 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc01g056990.3.1 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!