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  5. LOC_Os12g43550.1

LOC_Os12g43550.1


Description : F-class RAB GTPase


Gene families : OG0002724 (Archaeplastida) Phylogenetic Tree(s): OG0002724_tree ,
OG_05_0002567 (LandPlants) Phylogenetic Tree(s): OG_05_0002567_tree ,
OG_06_0002349 (SeedPlants) Phylogenetic Tree(s): OG_06_0002349_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g43550.1
Cluster HCCA: Cluster_352

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00012740 evm_27.TU.AmTr_v1... Vesicle trafficking.regulation of membrane tethering and... 0.05 Archaeplastida
AT5G45130 RAB5A, RHA1,... RAB homolog 1 0.04 Archaeplastida
Cre12.g517400 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
GSVIVT01015398001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.02 Archaeplastida
Gb_39564 No alias F-class RAB GTPase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Neighborhood
MF GO:0004096 catalase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004602 glutathione peroxidase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006576 cellular biogenic amine metabolic process IEP Neighborhood
BP GO:0006595 polyamine metabolic process IEP Neighborhood
BP GO:0006596 polyamine biosynthetic process IEP Neighborhood
BP GO:0006597 spermine biosynthetic process IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008215 spermine metabolic process IEP Neighborhood
BP GO:0008216 spermidine metabolic process IEP Neighborhood
BP GO:0008295 spermidine biosynthetic process IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
MF GO:0008430 selenium binding IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009308 amine metabolic process IEP Neighborhood
BP GO:0009309 amine biosynthetic process IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044106 cellular amine metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0097164 ammonium ion metabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001806 Small_GTPase 13 169
No external refs found!