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  5. LOC_Os12g43880.1

LOC_Os12g43880.1


Description : no description available(sp|q65xs5|bc10_orysj : 149.0)


Gene families : OG0000189 (Archaeplastida) Phylogenetic Tree(s): OG0000189_tree ,
OG_05_0000499 (LandPlants) Phylogenetic Tree(s): OG_05_0000499_tree ,
OG_06_0000285 (SeedPlants) Phylogenetic Tree(s): OG_06_0000285_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g43880.1
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00179880 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00079p00180800 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AT1G10880 No alias Core-2/I-branching... 0.08 Archaeplastida
AT1G68380 No alias Core-2/I-branching... 0.03 Archaeplastida
AT1G73810 No alias Core-2/I-branching... 0.04 Archaeplastida
AT4G30060 No alias Core-2/I-branching... 0.02 Archaeplastida
AT5G16170 No alias Core-2/I-branching... 0.05 Archaeplastida
GSVIVT01008319001 No alias No description available 0.03 Archaeplastida
GSVIVT01010878001 No alias No description available 0.04 Archaeplastida
GSVIVT01011861001 No alias No description available 0.03 Archaeplastida
GSVIVT01031004001 No alias No description available 0.04 Archaeplastida
Gb_25831 No alias no description available(sp|q65xs5|bc10_orysj : 177.0) 0.02 Archaeplastida
LOC_Os02g22160.1 No alias no description available(sp|q65xs5|bc10_orysj : 129.0) 0.05 Archaeplastida
MA_112910g0020 No alias no description available(sp|q65xs5|bc10_orysj : 127.0) 0.05 Archaeplastida
MA_11883g0010 No alias no description available(sp|q65xs5|bc10_orysj : 160.0) 0.02 Archaeplastida
MA_28957g0010 No alias no description available(sp|q65xs5|bc10_orysj : 129.0) 0.02 Archaeplastida
MA_4521g0020 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp4g14550.1 No alias no description available(sp|q65xs5|bc10_orysj : 182.0) 0.04 Archaeplastida
Mp8g13670.1 No alias no description available(sp|q65xs5|bc10_orysj : 104.0) 0.03 Archaeplastida
Pp3c10_22140V3.1 No alias Core-2/I-branching... 0.02 Archaeplastida
Pp3c11_7060V3.1 No alias Core-2/I-branching... 0.02 Archaeplastida
Pp3c2_20630V3.1 No alias Core-2/I-branching... 0.02 Archaeplastida
Solyc05g009120.3.1 No alias no description available(sp|q65xs5|bc10_orysj : 165.0) 0.04 Archaeplastida
Solyc05g009130.4.1 No alias no description available(sp|q65xs5|bc10_orysj : 176.0) 0.03 Archaeplastida
Zm00001e005573_P001 No alias no description available(sp|q65xs5|bc10_orysj : 162.0) 0.02 Archaeplastida
Zm00001e029160_P001 No alias no description available(sp|q65xs5|bc10_orysj : 176.0) 0.02 Archaeplastida
Zm00001e040053_P001 No alias no description available(sp|q65xs5|bc10_orysj : 165.0) 0.04 Archaeplastida
Zm00001e042023_P001 No alias no description available(sp|q65xs5|bc10_orysj : 163.0) 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004866 endopeptidase inhibitor activity IEP Neighborhood
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0030414 peptidase inhibitor activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0061134 peptidase regulator activity IEP Neighborhood
MF GO:0061135 endopeptidase regulator activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR003406 Glyco_trans_14 138 365
No external refs found!