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  5. Smo104804

Smo104804


Description : Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCq component


Gene families : OG0000035 (Archaeplastida) Phylogenetic Tree(s): OG0000035_tree ,
OG_05_0007547 (LandPlants) Phylogenetic Tree(s): OG_05_0007547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo104804
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00268360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
AMTR_s00010p00264770 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
AMTR_s00013p00180670 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
AMTR_s00022p00112770 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AMTR_s00029p00239610 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.08 Archaeplastida
AMTR_s00045p00069900 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00061p00059490 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
AMTR_s00088p00153020 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
AMTR_s00099p00139960 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.07 Archaeplastida
AMTR_s00131p00114510 evm_27.TU.AmTr_v1... Photosystem I chlorophyll a/b-binding protein 6,... 0.04 Archaeplastida
AMTR_s00175p00040360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
AT1G15820 CP24, LHCB6 light harvesting complex photosystem II subunit 6 0.03 Archaeplastida
AT1G19150 LHCA2*1, LHCA6 photosystem I light harvesting complex gene 6 0.04 Archaeplastida
AT1G29910 CAB3, AB180, LHCB1.2 chlorophyll A/B binding protein 3 0.02 Archaeplastida
AT1G29920 CAB2, AB165, LHCB1.1 chlorophyll A/B-binding protein 2 0.02 Archaeplastida
AT1G29930 LHCB1.3, CAB140,... chlorophyll A/B binding protein 1 0.02 Archaeplastida
AT1G45474 LHCA5 photosystem I light harvesting complex gene 5 0.04 Archaeplastida
AT1G61520 LHCA3 photosystem I light harvesting complex gene 3 0.05 Archaeplastida
AT2G05070 LHCB2.2, LHCB2 photosystem II light harvesting complex gene 2.2 0.03 Archaeplastida
AT2G05100 LHCB2.1, LHCB2 photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
AT3G08940 LHCB4.2 light harvesting complex photosystem II 0.05 Archaeplastida
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 0.04 Archaeplastida
AT3G54890 LHCA1 photosystem I light harvesting complex gene 1 0.03 Archaeplastida
AT3G61470 LHCA2 photosystem I light harvesting complex gene 2 0.06 Archaeplastida
AT4G10340 LHCB5 light harvesting complex of photosystem II 5 0.04 Archaeplastida
AT5G01530 LHCB4.1 light harvesting complex photosystem II 0.06 Archaeplastida
AT5G54270 LHCB3*1, LHCB3 light-harvesting chlorophyll B-binding protein 3 0.02 Archaeplastida
Cre01.g066917 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre03.g156900 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre04.g232104 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre06.g272650 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
Cre06.g278213 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.06 Archaeplastida
Cre06.g283050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Cre06.g283950 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre06.g284250 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre06.g285250 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre07.g344950 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.03 Archaeplastida
Cre10.g425900 No alias Chlorophyll a-b binding protein 4, chloroplastic... 0.04 Archaeplastida
Cre10.g452050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 Archaeplastida
Cre11.g467573 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Cre12.g508750 No alias Photosystem I chlorophyll a/b-binding protein 6,... 0.03 Archaeplastida
Cre12.g548400 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre12.g548950 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre16.g673650 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre16.g687900 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
Cre17.g720250 No alias Photosynthesis.photophosphorylation.photosystem... 0.06 Archaeplastida
GSVIVT01007988001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
GSVIVT01009498001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
GSVIVT01010483001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
GSVIVT01013450001 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
GSVIVT01014439001 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
GSVIVT01015045001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
GSVIVT01016295001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
GSVIVT01019377001 No alias Photosystem I chlorophyll a/b-binding protein 3-1,... 0.03 Archaeplastida
GSVIVT01021405001 No alias Chlorophyll a-b binding protein 21, chloroplastic... 0.02 Archaeplastida
GSVIVT01029789001 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
Gb_10163 No alias component LHCa3 of LHC-I complex 0.03 Archaeplastida
Gb_18375 No alias component LHCa1 of LHC-I complex 0.04 Archaeplastida
Gb_25594 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.03 Archaeplastida
Gb_25595 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.04 Archaeplastida
Gb_32082 No alias component LHCa2 of LHC-I complex 0.02 Archaeplastida
LOC_Os01g41710.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
LOC_Os02g10390.1 No alias component LHCa3 of LHC-I complex 0.02 Archaeplastida
LOC_Os02g52650.1 No alias component LHCa5 of LHC-I complex 0.06 Archaeplastida
LOC_Os03g39610.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
LOC_Os04g38410.1 No alias component LHCb6 of LHC-II complex 0.04 Archaeplastida
LOC_Os06g21590.1 No alias component LHCa1 of LHC-I complex 0.02 Archaeplastida
LOC_Os07g38960.1 No alias component LHCa2 of LHC-I complex 0.04 Archaeplastida
LOC_Os08g33820.1 No alias component LHCa4 of LHC-I complex 0.02 Archaeplastida
LOC_Os09g12540.1 No alias component LHCq of LHC-II complex 0.03 Archaeplastida
LOC_Os09g17740.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
LOC_Os09g26810.1 No alias component LHCa6 of LHC-I complex 0.02 Archaeplastida
MA_10431300g0020 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
MA_10431493g0010 No alias component LHCa1 of LHC-I complex 0.04 Archaeplastida
MA_176279g0010 No alias component LHCb5 of LHC-II complex 0.03 Archaeplastida
MA_18273g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_267089g0010 No alias Chlorophyll a-b binding protein type I, chloroplastic... 0.04 Archaeplastida
MA_65346g0010 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.04 Archaeplastida
MA_815900g0010 No alias component LHCa3 of LHC-I complex 0.03 Archaeplastida
MA_97315g0010 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.03 Archaeplastida
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp2g13460.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Mp4g00930.1 No alias component LHCa3 of LHC-I complex 0.03 Archaeplastida
Mp4g10900.1 No alias component LHCb5 of LHC-II complex 0.04 Archaeplastida
Mp6g01650.1 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp7g05890.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g06750.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 Archaeplastida
Mp7g06790.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Mp7g09340.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.03 Archaeplastida
Pp3c10_25360V3.1 No alias photosystem I light harvesting complex gene 2 0.02 Archaeplastida
Pp3c10_25415V3.1 No alias photosystem I light harvesting complex gene 2 0.04 Archaeplastida
Pp3c10_25450V3.1 No alias photosystem I light harvesting complex gene 2 0.03 Archaeplastida
Pp3c12_19200V3.1 No alias photosystem I light harvesting complex gene 2 0.02 Archaeplastida
Pp3c12_25430V3.1 No alias light harvesting complex photosystem II 0.04 Archaeplastida
Pp3c12_25460V3.1 No alias light harvesting complex photosystem II 0.03 Archaeplastida
Pp3c13_14980V3.1 No alias photosystem I light harvesting complex gene 1 0.02 Archaeplastida
Pp3c13_5930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c13_7900V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c16_16040V3.1 No alias photosystem I light harvesting complex gene 3 0.02 Archaeplastida
Pp3c19_20900V3.1 No alias light-harvesting chlorophyll B-binding protein 3 0.02 Archaeplastida
Pp3c1_34210V3.1 No alias light harvesting complex photosystem II subunit 6 0.04 Archaeplastida
Pp3c1_34240V3.1 No alias light harvesting complex photosystem II subunit 6 0.03 Archaeplastida
Pp3c20_23240V3.1 No alias photosystem I light harvesting complex gene 2 0.02 Archaeplastida
Pp3c21_3950V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c22_5610V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c26_12230V3.1 No alias light harvesting complex of photosystem II 5 0.03 Archaeplastida
Pp3c26_12240V3.1 No alias light harvesting complex of photosystem II 5 0.02 Archaeplastida
Pp3c26_6740V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c27_7010V3.1 No alias photosystem I light harvesting complex gene 3 0.02 Archaeplastida
Pp3c27_7020V3.1 No alias photosystem I light harvesting complex gene 3 0.03 Archaeplastida
Pp3c2_35930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c3_12510V3.1 No alias photosystem I light harvesting complex gene 1 0.02 Archaeplastida
Pp3c4_11854V3.1 No alias photosystem I light harvesting complex gene 5 0.02 Archaeplastida
Pp3c4_28370V3.1 No alias light harvesting complex of photosystem II 5 0.05 Archaeplastida
Pp3c4_29150V3.1 No alias photosystem I light harvesting complex gene 1 0.03 Archaeplastida
Pp3c4_29270V3.1 No alias photosystem I light harvesting complex gene 1 0.03 Archaeplastida
Pp3c4_5680V3.1 No alias light harvesting complex photosystem II 0.03 Archaeplastida
Pp3c4_5690V3.1 No alias light harvesting complex photosystem II 0.03 Archaeplastida
Pp3c6_22090V3.1 No alias photosystem I light harvesting complex gene 3 0.03 Archaeplastida
Solyc01g105050.3.1 No alias component LHCb6 of LHC-II complex 0.02 Archaeplastida
Solyc03g115900.4.1 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Solyc05g056050.3.1 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
Solyc06g063370.3.1 No alias component LHCb5 of LHC-II complex 0.05 Archaeplastida
Solyc07g022900.4.1 No alias component LHCa5 of LHC-I complex 0.05 Archaeplastida
Solyc09g014520.3.1 No alias component LHCb4 of LHC-II complex 0.05 Archaeplastida
Solyc10g006230.3.1 No alias component LHCa2 of LHC-I complex 0.07 Archaeplastida
Solyc10g007690.3.1 No alias component LHCa3 of LHC-I complex 0.04 Archaeplastida
Solyc12g011280.2.1 No alias component LHCa3 of LHC-I complex 0.02 Archaeplastida
Solyc12g011450.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Zm00001e004129_P001 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Zm00001e004940_P001 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Zm00001e004941_P001 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Zm00001e006561_P001 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida
Zm00001e011045_P002 No alias component LHCb5 of LHC-II complex 0.02 Archaeplastida
Zm00001e013742_P001 No alias component LHCa1 of LHC-I complex 0.02 Archaeplastida
Zm00001e020627_P001 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Zm00001e021290_P001 No alias component LHCb5 of LHC-II complex 0.02 Archaeplastida
Zm00001e022453_P001 No alias component LHCa4 of LHC-I complex 0.02 Archaeplastida
Zm00001e025141_P001 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
Zm00001e026547_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e032450_P001 No alias Chlorophyll a-b binding protein, chloroplastic OS=Zea... 0.03 Archaeplastida
Zm00001e033739_P001 No alias component LHCq of LHC-II complex 0.04 Archaeplastida
Zm00001e034922_P001 No alias Chlorophyll a-b binding protein 1, chloroplastic OS=Zea... 0.04 Archaeplastida
Zm00001e035235_P001 No alias component LHCb4 of LHC-II complex 0.02 Archaeplastida
Zm00001e035249_P001 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Zm00001e035349_P002 No alias component LHCa2 of LHC-I complex 0.03 Archaeplastida
Zm00001e041918_P001 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004109 coproporphyrinogen oxidase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
BP GO:0006553 lysine metabolic process IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006865 amino acid transport IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009085 lysine biosynthetic process IEP Neighborhood
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
MF GO:0009975 cyclase activity IEP Neighborhood
MF GO:0009976 tocopherol cyclase activity IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
MF GO:0010242 oxygen evolving activity IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0043648 dicarboxylic acid metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0046451 diaminopimelate metabolic process IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
MF GO:0051743 red chlorophyll catabolite reductase activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0098656 anion transmembrane transport IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
BP GO:1903825 organic acid transmembrane transport IEP Neighborhood
BP GO:1905039 carboxylic acid transmembrane transport IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 116 291
No external refs found!