Smo104808

Description : DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica

Gene families : OG0000482 (Archaeplastida) Phylogenetic Tree(s): OG0000482_tree ,
OG_05_0003742 (LandPlants) Phylogenetic Tree(s): OG_05_0003742_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo104808
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00062p00159540	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana	0.02	Archaeplastida
AT2G40700	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.06	Archaeplastida
AT3G18600	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.04	Archaeplastida
AT5G05450	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.04	Archaeplastida
Cpa\|evm.model.tig00000441.11	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.01	Archaeplastida
Cpa\|evm.model.tig00020684.38	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.01	Archaeplastida
Cre03.g156150	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana	0.05	Archaeplastida
Cre03.g188550	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.05	Archaeplastida
Cre06.g282600	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana	0.01	Archaeplastida
Cre07.g314900	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.06	Archaeplastida
GSVIVT01008218001	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.03	Archaeplastida
GSVIVT01037636001	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_10018	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.02	Archaeplastida
Gb_12810	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.05	Archaeplastida
Gb_16157	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.03	Archaeplastida
LOC_Os01g07080.1	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.04	Archaeplastida
LOC_Os03g58810.1	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.04	Archaeplastida
MA_10334041g0020	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.03	Archaeplastida
MA_10435702g0020	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.01	Archaeplastida
MA_109969g0010	No alias	DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis...	0.03	Archaeplastida
Mp5g04780.1	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis...	0.03	Archaeplastida
Mp6g05260.1	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.06	Archaeplastida
Mp7g12890.1	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.09	Archaeplastida
Mp8g10290.1	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.06	Archaeplastida
Pp3c11_510V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	Archaeplastida
Pp3c17_13450V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Archaeplastida
Pp3c1_22540V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Archaeplastida
Pp3c4_14810V3.1	No alias	DEA(D/H)-box RNA helicase family protein	0.04	Archaeplastida
Solyc03g114370.4.1	No alias	no hits & (original description: none)	0.07	Archaeplastida
Solyc07g064520.3.1	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e010480_P001	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa...	0.04	Archaeplastida
Zm00001e011842_P001	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.06	Archaeplastida
Zm00001e016823_P002	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.04	Archaeplastida
Zm00001e027024_P001	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
BP	GO:0006188	IMP biosynthetic process	IEP	Neighborhood
BP	GO:0006189	'de novo' IMP biosynthetic process	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006334	nucleosome assembly	IEP	Neighborhood
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Neighborhood
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Neighborhood
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Neighborhood
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0022607	cellular component assembly	IEP	Neighborhood
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Neighborhood
BP	GO:0034728	nucleosome organization	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Neighborhood
BP	GO:0043933	protein-containing complex subunit organization	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044281	small molecule metabolic process	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0046040	IMP metabolic process	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:0065003	protein-containing complex assembly	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR025313	DUF4217	383	443

External Links

No external refs found!

Smo104808

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation