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  5. Smo104851

Smo104851


Description : Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0102910 (LandPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo104851
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.06 Archaeplastida
GSVIVT01009227001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.04 Archaeplastida
GSVIVT01011479001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.03 Archaeplastida
GSVIVT01031251001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.02 Archaeplastida
GSVIVT01033190001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.02 Archaeplastida
LOC_Os01g10800.1 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
LOC_Os02g50280.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
LOC_Os03g59264.1 No alias lectin chaperone (CRT) 0.03 Archaeplastida
LOC_Os04g39410.1 No alias RNA editing factor (OTP86) 0.03 Archaeplastida
LOC_Os04g51350.1 No alias RNA editing factor (AEF1) 0.03 Archaeplastida
LOC_Os07g02280.1 No alias RNA editing factor (OTP80) 0.03 Archaeplastida
MA_43615g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_653417g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Pp3c16_5160V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Solyc04g076800.3.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Zm00001e021457_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Zm00001e023498_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e029186_P001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 80 108
No external refs found!