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  5. Smo105729

Smo105729


Description : Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0102930 (LandPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo105729
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00270380 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00010p00262470 No alias Pentatricopeptide repeat-containing protein At2g02980,... 0.02 Archaeplastida
AMTR_s00025p00218280 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.06 Archaeplastida
AT1G08070 OTP82 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G39350 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
LOC_Os10g26070.1 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.02 Archaeplastida
Solyc08g014100.1.1 No alias Pentatricopeptide repeat-containing protein At5g43790... 0.03 Archaeplastida
Zm00001e006389_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e038850_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006644 phospholipid metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0090407 organophosphate biosynthetic process IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 319 342
No external refs found!