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  5. AMTR_s00012p00245710

AMTR_s00012p00245710 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00012.228

Description : Cell wall.lignin.monolignol conjugation and polymerization.lignin laccase


Gene families : OG0000114 (Archaeplastida) Phylogenetic Tree(s): OG0000114_tree ,
OG_05_0000045 (LandPlants) Phylogenetic Tree(s): OG_05_0000045_tree ,
OG_06_0000178 (SeedPlants) Phylogenetic Tree(s): OG_06_0000178_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00012p00245710
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00051360 evm_27.TU.AmTr_v1... Enzyme classification.EC_1 oxidoreductases.EC_1.10... 0.04 Archaeplastida
AT2G29130 ATLAC2, LAC2 laccase 2 0.06 Archaeplastida
AT2G38080 LAC4, IRX12,... Laccase/Diphenol oxidase family protein 0.06 Archaeplastida
AT5G01190 LAC10 laccase 10 0.06 Archaeplastida
AT5G05390 LAC12 laccase 12 0.06 Archaeplastida
AT5G58910 LAC16 laccase 16 0.05 Archaeplastida
AT5G60020 ATLAC17, LAC17 laccase 17 0.06 Archaeplastida
GSVIVT01012343001 No alias Laccase-14 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01016490001 No alias Cell wall.lignin.monolignol conjugation and... 0.04 Archaeplastida
GSVIVT01016513001 No alias Cell wall.lignin.monolignol conjugation and... 0.05 Archaeplastida
GSVIVT01024795001 No alias Cell wall.lignin.monolignol conjugation and... 0.05 Archaeplastida
GSVIVT01025046001 No alias Cell wall.lignin.monolignol conjugation and... 0.05 Archaeplastida
GSVIVT01032744001 No alias Laccase-12 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01034003001 No alias Cell wall.lignin.monolignol conjugation and... 0.05 Archaeplastida
GSVIVT01034137001 No alias Cell wall.lignin.monolignol conjugation and... 0.05 Archaeplastida
GSVIVT01034138001 No alias Cell wall.lignin.monolignol conjugation and... 0.06 Archaeplastida
GSVIVT01034139001 No alias Cell wall.lignin.monolignol conjugation and... 0.03 Archaeplastida
GSVIVT01034146001 No alias Cell wall.lignin.monolignol conjugation and... 0.04 Archaeplastida
GSVIVT01034783001 No alias Laccase-15 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_00462 No alias lignin laccase 0.02 Archaeplastida
Gb_33400 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Gb_34469 No alias Laccase-12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os01g62480.1 No alias lignin laccase 0.03 Archaeplastida
MA_118833g0010 No alias lignin laccase 0.06 Archaeplastida
MA_136989g0010 No alias Laccase-6 OS=Arabidopsis thaliana (sp|q9zpy2|lac6_arath... 0.03 Archaeplastida
MA_205016g0010 No alias Laccase-4 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Smo230356 No alias Laccase-4 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Smo78404 No alias Laccase-12 OS=Arabidopsis thaliana 0.02 Archaeplastida
Smo80214 No alias Laccase-4 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Solyc05g050540.4.1 No alias Laccase-6 OS=Arabidopsis thaliana (sp|q9zpy2|lac6_arath... 0.03 Archaeplastida
Solyc05g052340.4.1 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.05 Archaeplastida
Solyc05g052390.3.1 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc05g052400.3.1 No alias Laccase-12 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc06g048860.3.1 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.02 Archaeplastida
Solyc06g076330.3.1 No alias lignin laccase 0.03 Archaeplastida
Solyc07g049460.3.1 No alias Laccase-7 OS=Arabidopsis thaliana (sp|q9sr40|lac7_arath... 0.03 Archaeplastida
Solyc09g010990.3.1 No alias lignin laccase 0.04 Archaeplastida
Solyc09g011960.2.1 No alias lignin laccase 0.03 Archaeplastida
Solyc09g011970.3.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc09g014240.4.1 No alias lignin laccase 0.05 Archaeplastida
Solyc09g150105.1.1 No alias lignin laccase 0.03 Archaeplastida
Solyc10g076830.2.1 No alias lignin laccase 0.04 Archaeplastida
Solyc10g085090.3.1 No alias No annotation 0.05 Archaeplastida
Solyc12g056820.2.1 No alias Laccase-15 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e001209_P001 No alias lignin laccase 0.04 Archaeplastida
Zm00001e019303_P001 No alias lignin laccase 0.04 Archaeplastida
Zm00001e019316_P001 No alias lignin laccase 0.03 Archaeplastida
Zm00001e019412_P001 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e023886_P001 No alias Putative laccase-9 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e028767_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e028830_P002 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e031826_P001 No alias lignin laccase 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Neighborhood
MF GO:0015020 glucuronosyltransferase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR011706 Cu-oxidase_2 431 561
IPR011707 Cu-oxidase_3 39 152
IPR001117 Cu-oxidase 165 315
No external refs found!