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  4. Sequence
  5. Smo105823

Smo105823


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPP3 component


Gene families : OG0003127 (Archaeplastida) Phylogenetic Tree(s): OG0003127_tree ,
OG_05_0002232 (LandPlants) Phylogenetic Tree(s): OG_05_0002232_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo105823
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00182570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
AT4G25890 No alias 60S acidic ribosomal protein family 0.07 Archaeplastida
AT5G57290 No alias 60S acidic ribosomal protein family 0.12 Archaeplastida
GSVIVT01010910001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
Gb_31564 No alias component RPP3 of LSU proteome component 0.12 Archaeplastida
LOC_Os01g13080.1 No alias component RPP3 of LSU proteome component 0.04 Archaeplastida
LOC_Os06g48780.1 No alias component RPP3 of LSU proteome component 0.07 Archaeplastida
MA_10431312g0020 No alias component RPP3 of LSU proteome component. component... 0.07 Archaeplastida
MA_468112g0010 No alias component RPP3 of LSU proteome component 0.04 Archaeplastida
Mp3g07010.1 No alias component RPP3 of LSU proteome component 0.08 Archaeplastida
Pp3c21_16160V3.1 No alias 60S acidic ribosomal protein family 0.12 Archaeplastida
Pp3c22_2920V3.1 No alias 60S acidic ribosomal protein family 0.07 Archaeplastida
Solyc07g009330.4.1 No alias component RPP3 of LSU proteome component 0.07 Archaeplastida
Zm00001e013180_P001 No alias component RPP3 of LSU proteome component 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
CC GO:0034998 oligosaccharyltransferase I complex IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!