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  5. AMTR_s00012p00248430

AMTR_s00012p00248430 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00012.238

Description : Cell wall.lignin.monolignol conjugation and polymerization.lignin laccase


Gene families : OG0000114 (Archaeplastida) Phylogenetic Tree(s): OG0000114_tree ,
OG_05_0000045 (LandPlants) Phylogenetic Tree(s): OG_05_0000045_tree ,
OG_06_0000178 (SeedPlants) Phylogenetic Tree(s): OG_06_0000178_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00012p00248430
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01012329001 No alias Laccase-14 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01016490001 No alias Cell wall.lignin.monolignol conjugation and... 0.02 Archaeplastida
GSVIVT01033501001 No alias Laccase-11 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_33400 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Gb_34469 No alias Laccase-12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_57140g0020 No alias Laccase-12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp3g20310.1 No alias Laccase-2 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Smo105894 No alias Laccase-4 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Solyc02g085110.4.1 No alias Laccase-11 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc09g150105.1.1 No alias lignin laccase 0.03 Archaeplastida
Zm00001e019315_P001 No alias lignin laccase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006743 ubiquinone metabolic process IEP Neighborhood
BP GO:0006744 ubiquinone biosynthetic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
BP GO:0042180 cellular ketone metabolic process IEP Neighborhood
BP GO:0042181 ketone biosynthetic process IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:1901661 quinone metabolic process IEP Neighborhood
BP GO:1901663 quinone biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011707 Cu-oxidase_3 39 151
IPR001117 Cu-oxidase 165 316
IPR011706 Cu-oxidase_2 432 563
No external refs found!