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  5. Smo107914

Smo107914


Description : DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica


Gene families : OG0000758 (Archaeplastida) Phylogenetic Tree(s): OG0000758_tree ,
OG_05_0007084 (LandPlants) Phylogenetic Tree(s): OG_05_0007084_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo107914
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000792.35 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.02 Archaeplastida
Cre10.g420900 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.04 Archaeplastida
Cre16.g683500 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
GSVIVT01009935001 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.03 Archaeplastida
GSVIVT01036761001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
LOC_Os12g29660.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.07 Archaeplastida
Mp1g19410.1 No alias SSU processome assembly factor (SWA3) 0.02 Archaeplastida
Mp4g20180.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.01 Archaeplastida
Mp4g21330.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.04 Archaeplastida
Pp3c9_14310V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.06 Archaeplastida
Zm00001e010143_P002 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.04 Archaeplastida
Zm00001e035639_P002 No alias SSU processome assembly factor (SWA3) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 349 455
No external refs found!