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  5. Smo110980

Smo110980


Description : Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo110980
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Gb_05264 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_08744 No alias RNA editing factor (OTP82) 0.02 Archaeplastida
Gb_09361 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_13227 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_13599 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Gb_33061 No alias RNA editing factor (MEF3) 0.03 Archaeplastida
Gb_34736 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_36168 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Gb_40749 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Gb_41804 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
LOC_Os02g06880.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
MA_10311934g0010 No alias Pentatricopeptide repeat-containing protein At1g15510,... 0.02 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.04 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_114722g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_138190g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_175623g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
MA_25584g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_36643g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_6329g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_805687g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_812716g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_9384g0020 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.02 Archaeplastida
Smo106096 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Smo118039 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Smo127010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Smo131641 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.03 Archaeplastida
Smo133094 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.04 Archaeplastida
Smo42377 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.05 Archaeplastida
Smo428483 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo70138 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Smo73641 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Smo76226 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Smo80739 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Smo83034 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Smo92565 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.04 Archaeplastida
Smo97139 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Solyc03g114660.1.1 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046422 violaxanthin de-epoxidase activity IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 164 188
No external refs found!