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  5. Smo111266

Smo111266


Description : Polygalacturonase OS=Chamaecyparis obtusa


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000273 (LandPlants) Phylogenetic Tree(s): OG_05_0000273_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo111266
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00197210 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
AMTR_s00003p00197480 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.04 Archaeplastida
AMTR_s00045p00161910 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.02 Archaeplastida
AT1G02460 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G05650 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT1G05660 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G10640 No alias Pectin lyase-like superfamily protein 0.08 Archaeplastida
AT1G56710 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G60590 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT2G43880 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT2G43890 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT4G01890 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G44840 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
GSVIVT01004007001 No alias Polygalacturonase OS=Prunus persica 0.03 Archaeplastida
GSVIVT01008062001 No alias Polygalacturonase OS=Juniperus ashei 0.02 Archaeplastida
GSVIVT01013800001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01017305001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01017644001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01028132001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01028189001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01031298001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01032114001 No alias Polygalacturonase OS=Actinidia deliciosa 0.03 Archaeplastida
GSVIVT01032116001 No alias Polygalacturonase OS=Persea americana 0.04 Archaeplastida
GSVIVT01032117001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01032447001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01033359001 No alias Cell wall.pectin.modification and... 0.05 Archaeplastida
GSVIVT01033362001 No alias Cell wall.pectin.modification and... 0.02 Archaeplastida
GSVIVT01033364001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01038241001 No alias Polygalacturonase OS=Prunus persica 0.02 Archaeplastida
GSVIVT01038243001 No alias Polygalacturonase OS=Prunus persica 0.03 Archaeplastida
Gb_07779 No alias Polygalacturonase OS=Actinidia deliciosa... 0.04 Archaeplastida
Gb_12018 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.05 Archaeplastida
Gb_27331 No alias Polygalacturonase OS=Actinidia deliciosa... 0.02 Archaeplastida
LOC_Os01g19170.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os01g43490.1 No alias Polygalacturonase OS=Prunus persica... 0.02 Archaeplastida
LOC_Os02g03750.1 No alias Polygalacturonase OS=Actinidia deliciosa... 0.02 Archaeplastida
LOC_Os03g11760.1 No alias Polygalacturonase OS=Actinidia deliciosa... 0.02 Archaeplastida
LOC_Os03g59330.1 No alias polygalacturonase (QRT2) 0.03 Archaeplastida
LOC_Os11g14410.1 No alias Polygalacturonase OS=Prunus persica... 0.02 Archaeplastida
MA_101764g0010 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_127755g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_13282g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.02 Archaeplastida
MA_63122g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.02 Archaeplastida
MA_640601g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_9231294g0010 No alias No annotation 0.03 Archaeplastida
Mp3g10720.1 No alias Polygalacturonase OS=Chamaecyparis obtusa... 0.03 Archaeplastida
Mp3g21140.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc01g079130.2.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc01g087280.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g067630.3.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Solyc08g014560.3.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Solyc12g009420.3.1 No alias Polygalacturonase QRT2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc12g019130.3.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Solyc12g019140.3.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Solyc12g019220.1.1 No alias Polygalacturonase OS=Prunus persica... 0.02 Archaeplastida
Solyc12g019230.2.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Zm00001e006092_P001 No alias polygalacturonase (QRT2) 0.02 Archaeplastida
Zm00001e011814_P002 No alias Polygalacturonase OS=Actinidia deliciosa... 0.02 Archaeplastida
Zm00001e017465_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e019002_P001 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Zm00001e027720_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e032294_P001 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e036989_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0051015 actin filament binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 59 387
No external refs found!