Smo111647


Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/DBB transcription factor


Gene families : OG0000461 (Archaeplastida) Phylogenetic Tree(s): OG0000461_tree ,
OG_05_0004244 (LandPlants) Phylogenetic Tree(s): OG_05_0004244_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo111647
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00204180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.02 Archaeplastida
AMTR_s00182p00043350 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
AT2G31380 STH salt tolerance homologue 0.08 Archaeplastida
GSVIVT01024173001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
LOC_Os04g41560.2 No alias transcription factor (BBX-DBB) 0.02 Archaeplastida
Solyc06g073180.3.1 No alias transcription factor (BBX-DBB) 0.03 Archaeplastida
Zm00001e007720_P001 No alias transcription factor (BBX-DBB) 0.05 Archaeplastida
Zm00001e010221_P001 No alias transcription factor (BBX-DBB) 0.04 Archaeplastida
Zm00001e015053_P001 No alias No annotation 0.03 Archaeplastida
Zm00001e022915_P001 No alias transcription factor (BBX-DBB) 0.02 Archaeplastida
Zm00001e023122_P002 No alias transcription factor (BBX-DBB) 0.02 Archaeplastida
Zm00001e034791_P001 No alias transcription factor (BBX-DBB) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0005779 integral component of peroxisomal membrane IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009767 photosynthetic electron transport chain IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
CC GO:0031082 BLOC complex IEP Neighborhood
CC GO:0031083 BLOC-1 complex IEP Neighborhood
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Neighborhood
CC GO:0031300 intrinsic component of organelle membrane IEP Neighborhood
CC GO:0031301 integral component of organelle membrane IEP Neighborhood
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044438 microbody part IEP Neighborhood
CC GO:0044439 peroxisomal part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
InterPro domains Description Start Stop
IPR000315 Znf_B-box 3 42
No external refs found!