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Aliases : evm_27.TU.AmTr_v1.0_scaffold00012.301
Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC16 component
Gene families : OG0008550 (Archaeplastida) Phylogenetic Tree(s): OG0008550_tree ,
OG_05_0008848 (LandPlants) Phylogenetic Tree(s): OG_05_0008848_tree ,
OG_06_0010031 (SeedPlants) Phylogenetic Tree(s): OG_06_0010031_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00012p00257120 | |
| Cluster | HCCA: Cluster_179 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G46780 | PTAC16 | plastid transcriptionally active 16 | 0.25 | Archaeplastida | |
| GSVIVT01024905001 | No alias | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.13 | Archaeplastida | |
| Gb_02666 | No alias | TAC16 cofactor of plastid-encoded RNA polymerase | 0.12 | Archaeplastida | |
| LOC_Os05g22614.1 | No alias | TAC16 cofactor of plastid-encoded RNA polymerase | 0.07 | Archaeplastida | |
| MA_806g0020 | No alias | TAC16 cofactor of plastid-encoded RNA polymerase | 0.14 | Archaeplastida | |
| Mp8g16460.1 | No alias | TAC16 cofactor of plastid-encoded RNA polymerase | 0.19 | Archaeplastida | |
| Pp3c1_14800V3.1 | No alias | plastid transcriptionally active 16 | 0.05 | Archaeplastida | |
| Solyc06g005710.3.1 | No alias | TAC16 cofactor of plastid-encoded RNA polymerase | 0.18 | Archaeplastida | |
| Zm00001e026770_P002 | No alias | TAC16 cofactor of plastid-encoded RNA polymerase | 0.12 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | Neighborhood |
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003824 | catalytic activity | IEP | Neighborhood |
| MF | GO:0004356 | glutamate-ammonia ligase activity | IEP | Neighborhood |
| MF | GO:0004618 | phosphoglycerate kinase activity | IEP | Neighborhood |
| MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005509 | calcium ion binding | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005960 | glycine cleavage complex | IEP | Neighborhood |
| BP | GO:0006082 | organic acid metabolic process | IEP | Neighborhood |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | Neighborhood |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | Neighborhood |
| BP | GO:0006457 | protein folding | IEP | Neighborhood |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0006536 | glutamate metabolic process | IEP | Neighborhood |
| BP | GO:0006537 | glutamate biosynthetic process | IEP | Neighborhood |
| BP | GO:0006541 | glutamine metabolic process | IEP | Neighborhood |
| BP | GO:0006542 | glutamine biosynthetic process | IEP | Neighborhood |
| BP | GO:0006546 | glycine catabolic process | IEP | Neighborhood |
| BP | GO:0006553 | lysine metabolic process | IEP | Neighborhood |
| BP | GO:0006754 | ATP biosynthetic process | IEP | Neighborhood |
| BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0008150 | biological_process | IEP | Neighborhood |
| BP | GO:0008152 | metabolic process | IEP | Neighborhood |
| BP | GO:0008652 | cellular amino acid biosynthetic process | IEP | Neighborhood |
| MF | GO:0008839 | 4-hydroxy-tetrahydrodipicolinate reductase | IEP | Neighborhood |
| MF | GO:0009055 | electron transfer activity | IEP | Neighborhood |
| BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
| BP | GO:0009063 | cellular amino acid catabolic process | IEP | Neighborhood |
| BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0009071 | serine family amino acid catabolic process | IEP | Neighborhood |
| BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0009085 | lysine biosynthetic process | IEP | Neighborhood |
| BP | GO:0009089 | lysine biosynthetic process via diaminopimelate | IEP | Neighborhood |
| BP | GO:0009123 | nucleoside monophosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009124 | nucleoside monophosphate biosynthetic process | IEP | Neighborhood |
| BP | GO:0009126 | purine nucleoside monophosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009127 | purine nucleoside monophosphate biosynthetic process | IEP | Neighborhood |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | Neighborhood |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | Neighborhood |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | Neighborhood |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | Neighborhood |
| BP | GO:0009156 | ribonucleoside monophosphate biosynthetic process | IEP | Neighborhood |
| BP | GO:0009161 | ribonucleoside monophosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | Neighborhood |
| BP | GO:0009167 | purine ribonucleoside monophosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009168 | purine ribonucleoside monophosphate biosynthetic process | IEP | Neighborhood |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | Neighborhood |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | Neighborhood |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | Neighborhood |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | Neighborhood |
| MF | GO:0009496 | plastoquinol--plastocyanin reductase activity | IEP | Neighborhood |
| CC | GO:0009521 | photosystem | IEP | Neighborhood |
| CC | GO:0009522 | photosystem I | IEP | Neighborhood |
| CC | GO:0009523 | photosystem II | IEP | Neighborhood |
| CC | GO:0009538 | photosystem I reaction center | IEP | Neighborhood |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0010109 | regulation of photosynthesis | IEP | Neighborhood |
| MF | GO:0015930 | glutamate synthase activity | IEP | Neighborhood |
| BP | GO:0015979 | photosynthesis | IEP | Neighborhood |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0016054 | organic acid catabolic process | IEP | Neighborhood |
| MF | GO:0016211 | ammonia ligase activity | IEP | Neighborhood |
| BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Neighborhood |
| MF | GO:0016491 | oxidoreductase activity | IEP | Neighborhood |
| MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Neighborhood |
| MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Neighborhood |
| MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | Neighborhood |
| MF | GO:0016774 | phosphotransferase activity, carboxyl group as acceptor | IEP | Neighborhood |
| MF | GO:0016880 | acid-ammonia (or amide) ligase activity | IEP | Neighborhood |
| MF | GO:0016987 | sigma factor activity | IEP | Neighborhood |
| BP | GO:0017004 | cytochrome complex assembly | IEP | Neighborhood |
| BP | GO:0017144 | drug metabolic process | IEP | Neighborhood |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | Neighborhood |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Neighborhood |
| CC | GO:0019898 | extrinsic component of membrane | IEP | Neighborhood |
| BP | GO:0022607 | cellular component assembly | IEP | Neighborhood |
| MF | GO:0030145 | manganese ion binding | IEP | Neighborhood |
| BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| CC | GO:0034357 | photosynthetic membrane | IEP | Neighborhood |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0042135 | neurotransmitter catabolic process | IEP | Neighborhood |
| BP | GO:0042548 | regulation of photosynthesis, light reaction | IEP | Neighborhood |
| BP | GO:0042549 | photosystem II stabilization | IEP | Neighborhood |
| CC | GO:0042651 | thylakoid membrane | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043169 | cation binding | IEP | Neighborhood |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Neighborhood |
| BP | GO:0043467 | regulation of generation of precursor metabolites and energy | IEP | Neighborhood |
| BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | Neighborhood |
| BP | GO:0043650 | dicarboxylic acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0044281 | small molecule metabolic process | IEP | Neighborhood |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044425 | membrane part | IEP | Neighborhood |
| CC | GO:0044436 | thylakoid part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0046034 | ATP metabolic process | IEP | Neighborhood |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | Neighborhood |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0046395 | carboxylic acid catabolic process | IEP | Neighborhood |
| MF | GO:0046422 | violaxanthin de-epoxidase activity | IEP | Neighborhood |
| BP | GO:0046451 | diaminopimelate metabolic process | IEP | Neighborhood |
| MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
| MF | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | IEP | Neighborhood |
| MF | GO:0048037 | cofactor binding | IEP | Neighborhood |
| BP | GO:0051186 | cofactor metabolic process | IEP | Neighborhood |
| BP | GO:0051188 | cofactor biosynthetic process | IEP | Neighborhood |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | Neighborhood |
| MF | GO:0051537 | 2 iron, 2 sulfur cluster binding | IEP | Neighborhood |
| MF | GO:0051540 | metal cluster binding | IEP | Neighborhood |
| MF | GO:0052880 | oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor | IEP | Neighborhood |
| BP | GO:0055114 | oxidation-reduction process | IEP | Neighborhood |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0098796 | membrane protein complex | IEP | Neighborhood |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | Neighborhood |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | Neighborhood |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Neighborhood |
| BP | GO:1901606 | alpha-amino acid catabolic process | IEP | Neighborhood |
| BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | Neighborhood |
| CC | GO:1902494 | catalytic complex | IEP | Neighborhood |
| CC | GO:1990204 | oxidoreductase complex | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |