Smo113878


Description : Vesicle trafficking.endomembrane trafficking.vacuolar sorting.AP-4 vacuole cargo adaptor complex.AP4S small sigma subunit


Gene families : OG0000560 (Archaeplastida) Phylogenetic Tree(s): OG0000560_tree ,
OG_05_0007286 (LandPlants) Phylogenetic Tree(s): OG_05_0007286_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo113878
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g59660.1 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.06 Archaeplastida
Smo446561 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 Archaeplastida
Solyc04g081410.3.1 No alias small subunit sigma of AP-2 cargo adaptor complex 0.03 Archaeplastida
Solyc11g005220.2.1 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.04 Archaeplastida
Zm00001e005895_P003 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.06 Archaeplastida
Zm00001e038638_P001 No alias small subunit sigma of AP-3 Golgi to vacuole cargo... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016125 sterol metabolic process IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR022775 AP_mu_sigma_su 3 141
No external refs found!