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Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor
Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo113962 | |
| Cluster | HCCA: Cluster_53 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00071p00198520 | evm_27.TU.AmTr_v1... | Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
| AMTR_s00109p00015260 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.MADS box... | 0.02 | Archaeplastida | |
| AT1G77950 | AGL67 | AGAMOUS-like 67 | 0.03 | Archaeplastida | |
| GSVIVT01012249001 | No alias | RNA biosynthesis.transcriptional activation.MADS box... | 0.02 | Archaeplastida | |
| GSVIVT01035477001 | No alias | RNA biosynthesis.transcriptional activation.MADS box... | 0.03 | Archaeplastida | |
| LOC_Os08g41960.1 | No alias | transcription factor (MADS/AGL) | 0.01 | Archaeplastida | |
| MA_10256834g0010 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| MA_10432602g0010 | No alias | no hits & (original description: none) | 0.01 | Archaeplastida | |
| MA_10434339g0010 | No alias | MADS-box protein GGM13 OS=Gnetum gnemon... | 0.03 | Archaeplastida | |
| MA_113509g0010 | No alias | transcription factor (MADS/AGL) | 0.03 | Archaeplastida | |
| MA_1767g0010 | No alias | transcription factor (MADS/AGL) | 0.01 | Archaeplastida | |
| MA_629987g0010 | No alias | MADS-box protein GGM13 OS=Gnetum gnemon... | 0.03 | Archaeplastida | |
| MA_6544g0010 | No alias | Floral homeotic protein AGAMOUS OS=Panax ginseng... | 0.03 | Archaeplastida | |
| MA_9972589g0010 | No alias | no hits & (original description: none) | 0.01 | Archaeplastida | |
| Pp3c17_24040V3.1 | No alias | AGAMOUS-like 66 | 0.02 | Archaeplastida | |
| Smo5960 | No alias | RNA biosynthesis.transcriptional activation.MADS box... | 0.04 | Archaeplastida | |
| Smo93174 | No alias | RNA biosynthesis.transcriptional activation.MADS box... | 0.03 | Archaeplastida | |
| Solyc01g106720.1.1 | No alias | transcription factor (MADS/AGL) | 0.01 | Archaeplastida | |
| Solyc04g078300.3.1 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Solyc05g015750.3.1 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Solyc10g044965.1.1 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Solyc10g080030.2.1 | No alias | transcription factor (MADS/AGL) | 0.03 | Archaeplastida | |
| Solyc11g028020.3.1 | No alias | No annotation | 0.02 | Archaeplastida | |
| Zm00001e000846_P003 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Zm00001e003667_P001 | No alias | transcription factor (MADS/AGL) | 0.03 | Archaeplastida | |
| Zm00001e006950_P001 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Zm00001e010125_P001 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Zm00001e016529_P004 | No alias | transcription factor (MADS/AGL) | 0.04 | Archaeplastida | |
| Zm00001e026007_P004 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| Zm00001e030373_P001 | No alias | transcription factor (MADS/AGL) | 0.03 | Archaeplastida | |
| Zm00001e031267_P003 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Zm00001e034629_P001 | No alias | transcription factor (MADS/AGL) | 0.04 | Archaeplastida | |
| Zm00001e036159_P001 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Zm00001e038716_P004 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Zm00001e039774_P001 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000041 | transition metal ion transport | IEP | Neighborhood |
| BP | GO:0006508 | proteolysis | IEP | Neighborhood |
| BP | GO:0006575 | cellular modified amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0006811 | ion transport | IEP | Neighborhood |
| BP | GO:0006812 | cation transport | IEP | Neighborhood |
| BP | GO:0006825 | copper ion transport | IEP | Neighborhood |
| MF | GO:0009055 | electron transfer activity | IEP | Neighborhood |
| BP | GO:0015939 | pantothenate metabolic process | IEP | Neighborhood |
| BP | GO:0015940 | pantothenate biosynthetic process | IEP | Neighborhood |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | Neighborhood |
| BP | GO:0030001 | metal ion transport | IEP | Neighborhood |
| BP | GO:0034220 | ion transmembrane transport | IEP | Neighborhood |
| BP | GO:0035434 | copper ion transmembrane transport | IEP | Neighborhood |
| MF | GO:0045735 | nutrient reservoir activity | IEP | Neighborhood |
| BP | GO:0055085 | transmembrane transport | IEP | Neighborhood |
| BP | GO:0098655 | cation transmembrane transport | IEP | Neighborhood |
| BP | GO:0098660 | inorganic ion transmembrane transport | IEP | Neighborhood |
| BP | GO:0098662 | inorganic cation transmembrane transport | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002100 | TF_MADSbox | 10 | 57 |
| No external refs found! |