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  4. Sequence
  5. Smo115495

Smo115495


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS20 component


Gene families : OG0002786 (Archaeplastida) Phylogenetic Tree(s): OG0002786_tree ,
OG_05_0002775 (LandPlants) Phylogenetic Tree(s): OG_05_0002775_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo115495
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00105050 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
AT3G45030 No alias Ribosomal protein S10p/S20e family protein 0.18 Archaeplastida
AT3G47370 No alias Ribosomal protein S10p/S20e family protein 0.18 Archaeplastida
AT5G62300 No alias Ribosomal protein S10p/S20e family protein 0.16 Archaeplastida
Cpa|evm.model.tig00000842.28 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
Cre16.g660150 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 Archaeplastida
GSVIVT01018553001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
Gb_35970 No alias component RPS20 of SSU proteome 0.02 Archaeplastida
LOC_Os03g14530.1 No alias component RPS20 of SSU proteome 0.1 Archaeplastida
LOC_Os06g04290.1 No alias component RPS20 of SSU proteome 0.1 Archaeplastida
LOC_Os10g08930.1 No alias component RPS20 of SSU proteome 0.12 Archaeplastida
MA_103406g0010 No alias component RPS20 of SSU proteome 0.16 Archaeplastida
MA_10429759g0010 No alias component RPS20 of SSU proteome 0.21 Archaeplastida
Mp2g09440.1 No alias component RPS20 of SSU proteome 0.2 Archaeplastida
Pp3c14_7180V3.1 No alias Ribosomal protein S10p/S20e family protein 0.17 Archaeplastida
Pp3c15_21510V3.1 No alias Ribosomal protein S10p/S20e family protein 0.16 Archaeplastida
Pp3c1_21860V3.1 No alias Ribosomal protein S10p/S20e family protein 0.13 Archaeplastida
Solyc01g096580.3.1 No alias component RPS20 of SSU proteome 0.17 Archaeplastida
Solyc01g096590.3.1 No alias component RPS20 of SSU proteome 0.07 Archaeplastida
Zm00001e001045_P001 No alias component RPS20 of SSU proteome 0.1 Archaeplastida
Zm00001e036579_P001 No alias component RPS20 of SSU proteome 0.12 Archaeplastida
Zm00001e038574_P001 No alias component RPS20 of SSU proteome 0.12 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
CC GO:0034998 oligosaccharyltransferase I complex IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 18 112
No external refs found!