Description : RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor
Gene families : OG0000365 (Archaeplastida) Phylogenetic Tree(s): OG0000365_tree ,
OG_05_0001853 (LandPlants) Phylogenetic Tree(s): OG_05_0001853_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Smo117159 | |
Cluster | HCCA: Cluster_106 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00009p00072720 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.06 | Archaeplastida | |
AMTR_s00011p00258380 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.04 | Archaeplastida | |
AMTR_s00011p00266100 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.07 | Archaeplastida | |
AMTR_s00025p00248060 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.03 | Archaeplastida | |
AT1G08540 | ATSIG1, SIGB,... | RNApolymerase sigma subunit 2 | 0.08 | Archaeplastida | |
AT2G36990 | SIGF, SIG6,... | RNApolymerase sigma-subunit F | 0.07 | Archaeplastida | |
GSVIVT01019326001 | No alias | RNA biosynthesis.organelle... | 0.04 | Archaeplastida | |
GSVIVT01024261001 | No alias | RNA biosynthesis.organelle... | 0.04 | Archaeplastida | |
GSVIVT01025717001 | No alias | RNA biosynthesis.organelle... | 0.02 | Archaeplastida | |
GSVIVT01035330001 | No alias | RNA biosynthesis.organelle... | 0.04 | Archaeplastida | |
Gb_05479 | No alias | basal transcription factor (Sigma) | 0.04 | Archaeplastida | |
Gb_37602 | No alias | basal transcription factor (Sigma) | 0.05 | Archaeplastida | |
LOC_Os03g16430.1 | No alias | basal transcription factor (Sigma) | 0.03 | Archaeplastida | |
LOC_Os05g50930.1 | No alias | basal transcription factor (Sigma) | 0.02 | Archaeplastida | |
LOC_Os08g06630.1 | No alias | basal transcription factor (Sigma) | 0.02 | Archaeplastida | |
LOC_Os08g14450.1 | No alias | basal transcription factor (Sigma) | 0.03 | Archaeplastida | |
LOC_Os11g26160.1 | No alias | basal transcription factor (Sigma) | 0.05 | Archaeplastida | |
MA_10362938g0010 | No alias | basal transcription factor (Sigma) | 0.01 | Archaeplastida | |
MA_10429585g0010 | No alias | basal transcription factor (Sigma) | 0.05 | Archaeplastida | |
Mp4g13380.1 | No alias | basal transcription factor (Sigma) | 0.04 | Archaeplastida | |
Pp3c14_4440V3.1 | No alias | sigma factor A | 0.03 | Archaeplastida | |
Pp3c1_36580V3.1 | No alias | RNApolymerase sigma subunit 2 | 0.05 | Archaeplastida | |
Pp3c22_18520V3.1 | No alias | sigma factor E | 0.02 | Archaeplastida | |
Solyc01g081490.3.1 | No alias | basal transcription factor (Sigma) | 0.03 | Archaeplastida | |
Solyc03g097320.3.1 | No alias | basal transcription factor (Sigma) | 0.03 | Archaeplastida | |
Solyc08g065970.3.1 | No alias | basal transcription factor (Sigma) | 0.03 | Archaeplastida | |
Solyc09g008040.3.1 | No alias | basal transcription factor (Sigma) | 0.04 | Archaeplastida | |
Zm00001e001198_P005 | No alias | basal transcription factor (Sigma) | 0.02 | Archaeplastida | |
Zm00001e011616_P008 | No alias | basal transcription factor (Sigma) | 0.02 | Archaeplastida | |
Zm00001e021420_P001 | No alias | basal transcription factor (Sigma) | 0.06 | Archaeplastida | |
Zm00001e021683_P001 | No alias | basal transcription factor (Sigma) | 0.02 | Archaeplastida | |
Zm00001e040174_P003 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006352 | DNA-templated transcription, initiation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000049 | tRNA binding | IEP | Neighborhood |
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
MF | GO:0003674 | molecular_function | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003747 | translation release factor activity | IEP | Neighborhood |
MF | GO:0004345 | glucose-6-phosphate dehydrogenase activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
MF | GO:0005525 | GTP binding | IEP | Neighborhood |
BP | GO:0006082 | organic acid metabolic process | IEP | Neighborhood |
BP | GO:0006399 | tRNA metabolic process | IEP | Neighborhood |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Neighborhood |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Neighborhood |
MF | GO:0008079 | translation termination factor activity | IEP | Neighborhood |
BP | GO:0008104 | protein localization | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
MF | GO:0008312 | 7S RNA binding | IEP | Neighborhood |
BP | GO:0015031 | protein transport | IEP | Neighborhood |
BP | GO:0015833 | peptide transport | IEP | Neighborhood |
MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | Neighborhood |
MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | Neighborhood |
MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Neighborhood |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
BP | GO:0017038 | protein import | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
BP | GO:0033036 | macromolecule localization | IEP | Neighborhood |
BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
BP | GO:0042886 | amide transport | IEP | Neighborhood |
BP | GO:0043038 | amino acid activation | IEP | Neighborhood |
BP | GO:0043039 | tRNA aminoacylation | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043168 | anion binding | IEP | Neighborhood |
BP | GO:0043436 | oxoacid metabolic process | IEP | Neighborhood |
BP | GO:0044281 | small molecule metabolic process | IEP | Neighborhood |
BP | GO:0045184 | establishment of protein localization | IEP | Neighborhood |
MF | GO:0070403 | NAD+ binding | IEP | Neighborhood |
BP | GO:0071702 | organic substance transport | IEP | Neighborhood |
BP | GO:0071705 | nitrogen compound transport | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007627 | RNA_pol_sigma70_r2 | 51 | 112 |
No external refs found! |