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  4. Sequence
  5. Smo117274

Smo117274


Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0000624 (Archaeplastida) Phylogenetic Tree(s): OG0000624_tree ,
OG_05_0000347 (LandPlants) Phylogenetic Tree(s): OG_05_0000347_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo117274
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00092220 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
AMTR_s00167p00019840 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AT1G31050 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 Archaeplastida
AT1G49830 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
AT1G61660 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
AT4G29100 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
GSVIVT01009761001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Gb_26693 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os04g41570.2 No alias transcription factor (bHLH) 0.01 Archaeplastida
LOC_Os05g42180.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os07g28890.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os08g08160.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Mp2g19970.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
Smo28262 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Solyc01g107490.2.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc01g150101.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc02g079760.3.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc03g031450.3.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc06g066580.4.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc10g006640.3.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e005748_P002 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e010350_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e016395_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e019609_P001 No alias transcription factor (bHLH) 0.01 Archaeplastida
Zm00001e021661_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e027157_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e031298_P001 No alias transcription factor (bHLH) 0.01 Archaeplastida
Zm00001e034854_P002 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e039938_P002 No alias transcription factor (bHLH) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Neighborhood
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Neighborhood
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004664 prephenate dehydratase activity IEP Neighborhood
MF GO:0004866 endopeptidase inhibitor activity IEP Neighborhood
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Neighborhood
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008172 S-methyltransferase activity IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
MF GO:0030414 peptidase inhibitor activity IEP Neighborhood
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
MF GO:0061134 peptidase regulator activity IEP Neighborhood
MF GO:0061135 endopeptidase regulator activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!