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  5. Smo120007

Smo120007


Description : CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays


Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0000737 (LandPlants) Phylogenetic Tree(s): OG_05_0000737_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo120007
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265220 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00028p00245370 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00045p00114550 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.05 Archaeplastida
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.05 Archaeplastida
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.04 Archaeplastida
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Archaeplastida
AT5G16180 ATCRS1, CRS1 ortholog of maize chloroplast splicing factor CRS1 0.03 Archaeplastida
GSVIVT01008296001 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
GSVIVT01015193001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01018109001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01031001001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01032542001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
Gb_18301 No alias CRM-domain containing factor CFM2, chloroplastic... 0.02 Archaeplastida
Gb_18303 No alias CRM-domain containing factor CFM2, chloroplastic... 0.05 Archaeplastida
Gb_37638 No alias CFM2-type plastidial RNA splicing factor. CFM3-type... 0.04 Archaeplastida
Gb_39217 No alias CFM2-type plastidial RNA splicing factor 0.02 Archaeplastida
LOC_Os04g39060.2 No alias CRM-domain containing factor CFM2, chloroplastic... 0.03 Archaeplastida
LOC_Os05g47850.1 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
LOC_Os08g27150.1 No alias CRS1 plastidial RNA splicing factor 0.03 Archaeplastida
LOC_Os09g19850.1 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
MA_10432072g0010 No alias CFM2-type plastidial RNA splicing factor 0.05 Archaeplastida
MA_10435740g0010 No alias CFM2-type plastidial RNA splicing factor 0.04 Archaeplastida
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Pp3c13_17270V3.1 No alias CRM family member 2 0.06 Archaeplastida
Solyc03g119450.3.1 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Solyc07g039500.4.1 No alias CRM-domain containing factor CFM3,... 0.07 Archaeplastida
Solyc09g083350.3.1 No alias CFM3-type plastidial RNA splicing factor 0.03 Archaeplastida
Zm00001e011272_P001 No alias CFM3-type plastidial RNA splicing factor 0.02 Archaeplastida
Zm00001e032339_P002 No alias CRM-domain containing factor CFM3,... 0.06 Archaeplastida
Zm00001e033939_P001 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Zm00001e041033_P001 No alias CFM2-type plastidial RNA splicing factor 0.04 Archaeplastida
Zm00001e041034_P001 No alias CFM2-type plastidial RNA splicing factor 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 278 362
No external refs found!