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  5. AMTR_s00013p00054980

AMTR_s00013p00054980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00013.17

Description : RNA biosynthesis.transcriptional activation.NF-Y transcription factor complex.NF-YC component


Gene families : OG0000443 (Archaeplastida) Phylogenetic Tree(s): OG0000443_tree ,
OG_05_0000515 (LandPlants) Phylogenetic Tree(s): OG_05_0000515_tree ,
OG_06_0000553 (SeedPlants) Phylogenetic Tree(s): OG_06_0000553_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00013p00054980
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AT3G48590 HAP5A, NF-YC1, ATHAP5A nuclear factor Y, subunit C1 0.02 Archaeplastida
LOC_Os03g14669.2 No alias component NF-YC of NF-Y transcription factor complex 0.02 Archaeplastida
Zm00001e001054_P002 No alias component NF-YC of NF-Y transcription factor complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0004150 dihydroneopterin aldolase activity IEP Neighborhood
BP GO:0006760 folic acid-containing compound metabolic process IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
BP GO:0009607 response to biotic stimulus IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
BP GO:0042558 pteridine-containing compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 66 129
No external refs found!