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  5. AMTR_s00013p00068760

AMTR_s00013p00068760 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00013.26

Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana


Gene families : OG0000139 (Archaeplastida) Phylogenetic Tree(s): OG0000139_tree ,
OG_05_0000052 (LandPlants) Phylogenetic Tree(s): OG_05_0000052_tree ,
OG_06_0000062 (SeedPlants) Phylogenetic Tree(s): OG_06_0000062_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00013p00068760
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00150860 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00023p00152840 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00023p00152880 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00023p00168910 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT3G44710 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT3G47200 No alias Plant protein of unknown function (DUF247) 0.06 Archaeplastida
AT3G47210 No alias Plant protein of unknown function (DUF247) 0.05 Archaeplastida
AT3G47250 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT3G50120 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT3G50130 No alias Plant protein of unknown function (DUF247) 0.05 Archaeplastida
AT3G50150 No alias Plant protein of unknown function (DUF247) 0.04 Archaeplastida
AT3G50190 No alias Plant protein of unknown function (DUF247) 0.02 Archaeplastida
AT5G11290 No alias Plant protein of unknown function (DUF247) 0.04 Archaeplastida
AT5G22540 No alias Plant protein of unknown function (DUF247) 0.02 Archaeplastida
AT5G22550 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
GSVIVT01001131001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.07 Archaeplastida
GSVIVT01033580001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.08 Archaeplastida
GSVIVT01035823001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os01g21650.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os01g21670.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os01g38120.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os05g15230.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os06g37280.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os08g25030.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os08g30520.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os08g42570.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os11g34090.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os12g29620.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.06 Archaeplastida
LOC_Os12g29650.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_10434321g0020 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_26069g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 Archaeplastida
Solyc03g078830.1.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc04g016020.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc05g006690.3.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc09g009230.2.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Solyc10g079520.1.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Solyc10g079530.2.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Solyc12g099300.1.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003840 obsolete gamma-glutamyltransferase activity IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006184 obsolete GTP catabolic process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
InterPro domains Description Start Stop
IPR004158 DUF247_pln 32 436
No external refs found!