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  5. Smo135281

Smo135281


Description : Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0007267 (Archaeplastida) Phylogenetic Tree(s): OG0007267_tree ,
OG_05_0005245 (LandPlants) Phylogenetic Tree(s): OG_05_0005245_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo135281
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00069110 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g42310,... 0.05 Archaeplastida
AT5G42310 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Archaeplastida
GSVIVT01013362001 No alias Pentatricopeptide repeat-containing protein At5g42310,... 0.04 Archaeplastida
Gb_11328 No alias plastidial mRNA processing factor (CRP1) 0.03 Archaeplastida
LOC_Os07g36390.1 No alias plastidial mRNA processing factor (CRP1) 0.03 Archaeplastida
MA_65267g0010 No alias plastidial mRNA processing factor (CRP1) 0.02 Archaeplastida
Mp5g09810.1 No alias plastidial mRNA processing factor (CRP1) 0.03 Archaeplastida
Zm00001e035192_P001 No alias plastidial mRNA processing factor (CRP1) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR033443 PPR_long 215 371
No external refs found!