Description : Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana
Gene families : OG0000306 (Archaeplastida) Phylogenetic Tree(s): OG0000306_tree ,
OG_05_0007143 (LandPlants) Phylogenetic Tree(s): OG_05_0007143_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Smo135826 | |
Cluster | HCCA: Cluster_28 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00025p00175980 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g48730,... | 0.03 | Archaeplastida | |
AT1G62350 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Archaeplastida | |
AT3G53170 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Archaeplastida | |
GSVIVT01017677001 | No alias | Pentatricopeptide repeat-containing protein At3g06430,... | 0.03 | Archaeplastida | |
GSVIVT01032162001 | No alias | Pentatricopeptide repeat-containing protein At3g53170... | 0.03 | Archaeplastida | |
Gb_14850 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.04 | Archaeplastida | |
LOC_Os02g51480.1 | No alias | Pentatricopeptide repeat-containing protein PPR5... | 0.03 | Archaeplastida | |
LOC_Os03g19650.3 | No alias | Pentatricopeptide repeat-containing protein At3g06430,... | 0.03 | Archaeplastida | |
MA_946756g0010 | No alias | Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... | 0.04 | Archaeplastida | |
Smo119487 | No alias | Pentatricopeptide repeat-containing protein At1g19720... | 0.03 | Archaeplastida | |
Smo416782 | No alias | Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... | 0.03 | Archaeplastida | |
Zm00001e023883_P001 | No alias | Pentatricopeptide repeat-containing protein PPR5,... | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
CC | GO:0005839 | proteasome core complex | IEP | Neighborhood |
BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
MF | GO:0019825 | oxygen binding | IEP | Neighborhood |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 383 | 412 |
No external refs found! |