1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00013p00150040

AMTR_s00013p00150040 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00013.75

Description : RNA biosynthesis.transcriptional activation.SBP transcription factor


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree ,
OG_06_0000075 (SeedPlants) Phylogenetic Tree(s): OG_06_0000075_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00013p00150040
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AT1G27360 SPL11 squamosa promoter-like 11 0.04 Archaeplastida
AT1G27370 SPL10 squamosa promoter binding protein-like 10 0.03 Archaeplastida
AT2G42200 AtSPL9, SPL9 squamosa promoter binding protein-like 9 0.03 Archaeplastida
Cre07.g325738 No alias RNA biosynthesis.transcriptional activation.SBP... 0.01 Archaeplastida
GSVIVT01010496001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
GSVIVT01018204001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
GSVIVT01021087001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
GSVIVT01033064001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.05 Archaeplastida
Gb_03922 No alias transcription factor (SBP) 0.03 Archaeplastida
Gb_15605 No alias transcription factor (SBP) 0.05 Archaeplastida
Gb_23724 No alias transcription factor (SBP) 0.02 Archaeplastida
Gb_27198 No alias transcription factor (SBP) 0.03 Archaeplastida
Gb_38013 No alias transcription factor (SBP) 0.05 Archaeplastida
Gb_38014 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os02g04680.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os02g08070.1 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os07g32170.1 No alias transcription factor (SBP) 0.05 Archaeplastida
LOC_Os08g41940.1 No alias transcription factor (SBP) 0.05 Archaeplastida
LOC_Os09g32944.1 No alias transcription factor (SBP) 0.05 Archaeplastida
MA_3179g0020 No alias transcription factor (SBP) 0.03 Archaeplastida
MA_92489g0010 No alias transcription factor (SBP) 0.02 Archaeplastida
Mp1g10020.1 No alias transcription factor (SBP) 0.05 Archaeplastida
Mp1g10030.1 No alias transcription factor (SBP) 0.04 Archaeplastida
Pp3c16_7480V3.1 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.02 Archaeplastida
Pp3c16_7490V3.1 No alias squamosa promoter binding protein-like 2 0.05 Archaeplastida
Pp3c25_8630V3.1 No alias squamosa promoter binding protein-like 2 0.04 Archaeplastida
Pp3c4_6000V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Pp3c6_6900V3.1 No alias squamosa promoter binding protein-like 8 0.03 Archaeplastida
Solyc01g090730.3.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Solyc05g015840.3.1 No alias transcription factor (SBP) 0.05 Archaeplastida
Solyc07g062980.4.1 No alias transcription factor (SBP) 0.05 Archaeplastida
Solyc10g009080.4.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc10g018780.3.1 No alias transcription factor (SBP) 0.04 Archaeplastida
Solyc10g078700.3.1 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e003546_P002 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e003571_P002 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e006686_P001 No alias transcription factor (SBP) 0.06 Archaeplastida
Zm00001e010067_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e010124_P002 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e010443_P001 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e013795_P002 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e025234_P001 No alias transcription factor (SBP) 0.08 Archaeplastida
Zm00001e028442_P002 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e034537_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e034628_P001 No alias transcription factor (SBP) 0.06 Archaeplastida
Zm00001e035060_P002 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e037693_P001 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e041526_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e041822_P001 No alias transcription factor (SBP) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004333 SBP_dom 105 182
No external refs found!