1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00013p00175910

AMTR_s00013p00175910 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00013.98

Description : Probable methyltransferase At1g27930 OS=Arabidopsis thaliana


Gene families : OG0000727 (Archaeplastida) Phylogenetic Tree(s): OG0000727_tree ,
OG_05_0041937 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0036411 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00013p00175910
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AT1G09610 No alias Protein of unknown function (DUF579) 0.08 Archaeplastida
AT1G67330 No alias Protein of unknown function (DUF579) 0.03 Archaeplastida
AT3G50220 No alias Protein of unknown function (DUF579) 0.1 Archaeplastida
AT5G67210 No alias Protein of unknown function (DUF579) 0.08 Archaeplastida
GSVIVT01004862001 No alias Cell wall.hemicellulose.xylan.modification and... 0.03 Archaeplastida
GSVIVT01023202001 No alias No description available 0.07 Archaeplastida
GSVIVT01023221001 No alias Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana 0.06 Archaeplastida
Gb_12265 No alias glucuronoxylan 4-O-methyltransferase 0.04 Archaeplastida
Gb_31046 No alias glucuronoxylan 4-O-methyltransferase 0.03 Archaeplastida
Gb_35413 No alias Protein IRX15-LIKE OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os02g06380.1 No alias Protein IRX15-LIKE OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os11g13870.1 No alias Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis... 0.05 Archaeplastida
MA_10430239g0010 No alias glucuronoxylan 4-O-methyltransferase 0.04 Archaeplastida
MA_58340g0010 No alias Protein IRX15-LIKE OS=Arabidopsis thaliana... 0.06 Archaeplastida
Smo57632 No alias Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc01g103360.4.1 No alias glucuronoxylan 4-O-methyltransferase 0.08 Archaeplastida
Solyc02g064945.1.1 No alias Protein IRX15-LIKE OS=Arabidopsis thaliana... 0.07 Archaeplastida
Solyc02g093090.1.1 No alias Protein IRX15-LIKE OS=Arabidopsis thaliana... 0.09 Archaeplastida
Solyc03g110890.1.1 No alias Probable methyltransferase At1g27930 OS=Arabidopsis... 0.03 Archaeplastida
Solyc11g031950.1.1 No alias glucuronoxylan 4-O-methyltransferase 0.02 Archaeplastida
Zm00001e011047_P001 No alias Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e013688_P001 No alias Protein IRX15-LIKE OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e039770_P002 No alias glucuronoxylan 4-O-methyltransferase 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Neighborhood
MF GO:0015020 glucuronosyltransferase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR021148 Polysacc_synth_dom 77 242
No external refs found!