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Description : RNA processing.organelle machineries.RNA editing.ORRM-type RNA editing factor
Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000394 (LandPlants) Phylogenetic Tree(s): OG_05_0000394_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo140819 | |
| Cluster | HCCA: Cluster_7 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00012p00103290 | evm_27.TU.AmTr_v1... | Organelle RRM domain-containing protein 2, mitochondrial... | 0.06 | Archaeplastida | |
| AMTR_s00013p00256900 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
| AMTR_s00030p00198740 | evm_27.TU.AmTr_v1... | Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
| AMTR_s00114p00125610 | evm_27.TU.AmTr_v1... | Small RNA-binding protein 11, chloroplastic... | 0.04 | Archaeplastida | |
| AT1G18630 | GR-RBP6 | glycine-rich RNA-binding protein 6 | 0.06 | Archaeplastida | |
| AT2G37510 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.04 | Archaeplastida | |
| AT3G23830 | GR-RBP4, GRP4 | glycine-rich RNA-binding protein 4 | 0.11 | Archaeplastida | |
| AT3G46020 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.04 | Archaeplastida | |
| AT4G13850 | GRP2, ATGRP2, GR-RBP2 | glycine-rich RNA-binding protein 2 | 0.1 | Archaeplastida | |
| GSVIVT01014553001 | No alias | RNA processing.organelle machineries.RNA... | 0.02 | Archaeplastida | |
| GSVIVT01021024001 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
| GSVIVT01025527001 | No alias | Organelle RRM domain-containing protein 2, mitochondrial... | 0.01 | Archaeplastida | |
| Gb_07052 | No alias | RNA editing factor (ORRM) | 0.02 | Archaeplastida | |
| LOC_Os03g17060.1 | No alias | Organelle RRM domain-containing protein 2, mitochondrial... | 0.01 | Archaeplastida | |
| MA_10436424g0010 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.02 | Archaeplastida | |
| MA_14910g0010 | No alias | No annotation | 0.03 | Archaeplastida | |
| MA_28218g0010 | No alias | RNA editing factor (ORRM) | 0.02 | Archaeplastida | |
| MA_77292g0010 | No alias | RNA editing factor (ORRM) | 0.05 | Archaeplastida | |
| Mp1g21200.1 | No alias | RNA editing factor (ORRM) | 0.02 | Archaeplastida | |
| Mp3g06220.1 | No alias | 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia... | 0.06 | Archaeplastida | |
| Mp4g15980.1 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.03 | Archaeplastida | |
| Pp3c1_6280V3.1 | No alias | glycine-rich RNA-binding protein 3 | 0.03 | Archaeplastida | |
| Pp3c4_6610V3.1 | No alias | glycine-rich RNA-binding protein 3 | 0.06 | Archaeplastida | |
| Solyc01g104840.4.1 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.03 | Archaeplastida | |
| Solyc06g054380.4.1 | No alias | no hits & (original description: none) | 0.01 | Archaeplastida | |
| Solyc10g081180.2.1 | No alias | RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) | 0.02 | Archaeplastida | |
| Solyc10g083240.2.1 | No alias | Small RNA-binding protein 11, chloroplastic... | 0.02 | Archaeplastida | |
| Zm00001e008185_P001 | No alias | Small RNA-binding protein 11, chloroplastic... | 0.02 | Archaeplastida | |
| Zm00001e028481_P002 | No alias | RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) | 0.02 | Archaeplastida | |
| Zm00001e040294_P001 | No alias | RNA editing factor (ORRM) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000030 | mannosyltransferase activity | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005622 | intracellular | IEP | Neighborhood |
| BP | GO:0006284 | base-excision repair | IEP | Neighborhood |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Neighborhood |
| BP | GO:0006413 | translational initiation | IEP | Neighborhood |
| BP | GO:0006457 | protein folding | IEP | Neighborhood |
| BP | GO:0007034 | vacuolar transport | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| CC | GO:0030008 | TRAPP complex | IEP | Neighborhood |
| BP | GO:0030258 | lipid modification | IEP | Neighborhood |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0046834 | lipid phosphorylation | IEP | Neighborhood |
| BP | GO:0046854 | phosphatidylinositol phosphorylation | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
| CC | GO:0099023 | tethering complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 12 | 82 |
| No external refs found! |