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  5. Smo146841

Smo146841


Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop58 snoRNP scaffold component


Gene families : OG0003184 (Archaeplastida) Phylogenetic Tree(s): OG0003184_tree ,
OG_05_0003241 (LandPlants) Phylogenetic Tree(s): OG_05_0003241_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo146841
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00260990 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.04 Archaeplastida
AT3G05060 No alias NOP56-like pre RNA processing ribonucleoprotein 0.1 Archaeplastida
AT5G27120 No alias NOP56-like pre RNA processing ribonucleoprotein 0.08 Archaeplastida
Cpa|evm.model.tig00021350.31 No alias RNA processing.RNA modification.rRNA/tRNA... 0.04 Archaeplastida
Cre10.g441400 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 Archaeplastida
GSVIVT01021905001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 Archaeplastida
Gb_26926 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.06 Archaeplastida
LOC_Os03g22740.1 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.03 Archaeplastida
MA_513089g0010 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.02 Archaeplastida
Mp2g00370.1 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.02 Archaeplastida
Pp3c11_14260V3.1 No alias NOP56-like pre RNA processing ribonucleoprotein 0.03 Archaeplastida
Pp3c2_28380V3.1 No alias NOP56-like pre RNA processing ribonucleoprotein 0.03 Archaeplastida
Solyc09g083080.4.1 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.09 Archaeplastida
Zm00001e001659_P001 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e038207_P001 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004017 adenylate kinase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0050145 nucleoside monophosphate kinase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR012974 NOP5_N 2 65
No external refs found!