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  5. Smo148442

Smo148442


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS4 component


Gene families : OG0002504 (Archaeplastida) Phylogenetic Tree(s): OG0002504_tree ,
OG_05_0002300 (LandPlants) Phylogenetic Tree(s): OG_05_0002300_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo148442
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00058440 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
AT2G17360 No alias Ribosomal protein S4 (RPS4A) family protein 0.18 Archaeplastida
AT5G07090 No alias Ribosomal protein S4 (RPS4A) family protein 0.21 Archaeplastida
AT5G58420 No alias Ribosomal protein S4 (RPS4A) family protein 0.17 Archaeplastida
Cpa|evm.model.tig00021433.38 No alias 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica 0.12 Archaeplastida
Cre06.g308250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
GSVIVT01024668001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
GSVIVT01032756001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
LOC_Os01g25610.1 No alias component RPS4 of SSU proteome 0.15 Archaeplastida
LOC_Os02g01560.1 No alias component RPS4 of SSU proteome 0.15 Archaeplastida
LOC_Os05g30530.1 No alias component RPS4 of SSU proteome 0.12 Archaeplastida
MA_127596g0010 No alias component RPS4 of SSU proteome 0.09 Archaeplastida
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.2 Archaeplastida
Pp3c11_3690V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.19 Archaeplastida
Pp3c1_8290V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.23 Archaeplastida
Pp3c25_3730V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.11 Archaeplastida
Pp3c25_3736V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.05 Archaeplastida
Pp3c6_7730V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.08 Archaeplastida
Pp3c7_23800V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.12 Archaeplastida
Solyc02g070330.4.1 No alias component RPS4 of SSU proteome 0.16 Archaeplastida
Solyc02g070340.3.1 No alias component RPS4 of SSU proteome 0.17 Archaeplastida
Zm00001e006307_P001 No alias component RPS4 of SSU proteome 0.19 Archaeplastida
Zm00001e011676_P001 No alias component RPS4 of SSU proteome 0.17 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR005824 KOW 177 211
No external refs found!