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  5. AMTR_s00013p00211990

AMTR_s00013p00211990 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00013.147

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL17 component


Gene families : OG0001876 (Archaeplastida) Phylogenetic Tree(s): OG0001876_tree ,
OG_05_0001644 (LandPlants) Phylogenetic Tree(s): OG_05_0001644_tree ,
OG_06_0001980 (SeedPlants) Phylogenetic Tree(s): OG_06_0001980_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00013p00211990
Cluster HCCA: Cluster_263

Target Alias Description ECC score Gene Family Method Actions
AT1G27400 No alias Ribosomal protein L22p/L17e family protein 0.12 Archaeplastida
AT1G67430 No alias Ribosomal protein L22p/L17e family protein 0.08 Archaeplastida
Cpa|evm.model.tig00001215.8 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Cre13.g568900 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
GSVIVT01008528001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
GSVIVT01010449001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
GSVIVT01010450001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
LOC_Os08g41810.1 No alias component RPL17 of LSU proteome component 0.09 Archaeplastida
LOC_Os09g08430.1 No alias component RPL17 of LSU proteome component 0.13 Archaeplastida
MA_10430182g0010 No alias component RPL17 of LSU proteome component 0.08 Archaeplastida
MA_64923g0010 No alias component RPL17 of LSU proteome component 0.09 Archaeplastida
Mp1g10230.1 No alias component RPL17 of LSU proteome component 0.13 Archaeplastida
Pp3c11_5840V3.1 No alias Ribosomal protein L22p/L17e family protein 0.08 Archaeplastida
Pp3c1_6650V3.1 No alias Ribosomal protein L22p/L17e family protein 0.05 Archaeplastida
Pp3c2_29840V3.1 No alias Ribosomal protein L22p/L17e family protein 0.1 Archaeplastida
Pp3c7_25220V3.1 No alias Ribosomal protein L22p/L17e family protein 0.04 Archaeplastida
Pp3c7_25240V3.1 No alias Ribosomal protein L22p/L17e family protein 0.12 Archaeplastida
Smo96251 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
Solyc03g111230.4.1 No alias component RPL17 of LSU proteome component 0.04 Archaeplastida
Solyc06g071870.3.1 No alias component RPL17 of LSU proteome component 0.1 Archaeplastida
Solyc06g071880.4.1 No alias component RPL17 of LSU proteome component 0.08 Archaeplastida
Zm00001e003661_P001 No alias component RPL17 of LSU proteome component 0.14 Archaeplastida
Zm00001e005470_P001 No alias component RPL17 of LSU proteome component 0.03 Archaeplastida
Zm00001e021953_P003 No alias component RPL17 of LSU proteome component 0.1 Archaeplastida
Zm00001e026882_P002 No alias component RPL17 of LSU proteome component 0.09 Archaeplastida
Zm00001e031261_P001 No alias component RPL17 of LSU proteome component 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030150 protein import into mitochondrial matrix IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0065002 intracellular protein transmembrane transport IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0071806 protein transmembrane transport IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1990542 mitochondrial transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR001063 Ribosomal_L22 17 153
No external refs found!