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  4. Sequence
  5. Smo160411

Smo160411


Description : Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa3-type component


Gene families : OG0000035 (Archaeplastida) Phylogenetic Tree(s): OG0000035_tree ,
OG_05_0006484 (LandPlants) Phylogenetic Tree(s): OG_05_0006484_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo160411
Cluster HCCA: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00251360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
AMTR_s00009p00268360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
AMTR_s00010p00264770 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
AMTR_s00013p00180670 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
AMTR_s00029p00239610 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AMTR_s00045p00069900 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AMTR_s00061p00059490 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
AMTR_s00088p00153020 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00099p00139960 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00131p00114510 evm_27.TU.AmTr_v1... Photosystem I chlorophyll a/b-binding protein 6,... 0.04 Archaeplastida
AMTR_s00153p00078810 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AMTR_s00175p00040360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
AMTR_s00189p00032350 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AT1G15820 CP24, LHCB6 light harvesting complex photosystem II subunit 6 0.03 Archaeplastida
AT1G29910 CAB3, AB180, LHCB1.2 chlorophyll A/B binding protein 3 0.03 Archaeplastida
AT1G61520 LHCA3 photosystem I light harvesting complex gene 3 0.03 Archaeplastida
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 0.04 Archaeplastida
AT3G54890 LHCA1 photosystem I light harvesting complex gene 1 0.04 Archaeplastida
AT3G61470 LHCA2 photosystem I light harvesting complex gene 2 0.04 Archaeplastida
AT4G10340 LHCB5 light harvesting complex of photosystem II 5 0.03 Archaeplastida
AT5G01530 LHCB4.1 light harvesting complex photosystem II 0.03 Archaeplastida
AT5G54270 LHCB3*1, LHCB3 light-harvesting chlorophyll B-binding protein 3 0.04 Archaeplastida
Cre01.g066917 No alias Photosynthesis.photophosphorylation.photosystem... 0.06 Archaeplastida
Cre03.g156900 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre04.g232104 No alias Photosynthesis.photophosphorylation.photosystem... 0.06 Archaeplastida
Cre06.g272650 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
Cre06.g278213 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.02 Archaeplastida
Cre06.g283050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
Cre06.g283950 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre06.g284250 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre06.g285250 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre07.g344950 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.04 Archaeplastida
Cre10.g425900 No alias Chlorophyll a-b binding protein 4, chloroplastic... 0.03 Archaeplastida
Cre10.g452050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre11.g467573 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre12.g508750 No alias Photosystem I chlorophyll a/b-binding protein 6,... 0.04 Archaeplastida
Cre12.g548400 No alias Photosynthesis.photophosphorylation.photosystem... 0.06 Archaeplastida
Cre12.g548950 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre16.g673650 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre16.g687900 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
Cre17.g720250 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
GSVIVT01007988001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
GSVIVT01016295001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
GSVIVT01021405001 No alias Chlorophyll a-b binding protein 21, chloroplastic... 0.03 Archaeplastida
GSVIVT01021406001 No alias Chlorophyll a-b binding protein 2, chloroplastic... 0.06 Archaeplastida
GSVIVT01030053001 No alias Chlorophyll a-b binding protein 151, chloroplastic... 0.03 Archaeplastida
GSVIVT01037111001 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Gb_00063 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Gb_18375 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
Gb_27633 No alias component LHCb6 of LHC-II complex 0.04 Archaeplastida
Gb_30379 No alias Chlorophyll a-b binding protein CP26, chloroplastic... 0.04 Archaeplastida
Gb_38595 No alias component LHCb4 of LHC-II complex 0.03 Archaeplastida
LOC_Os01g41710.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
LOC_Os03g39610.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
LOC_Os04g38410.1 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida
LOC_Os06g21590.1 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
LOC_Os07g37240.1 No alias component LHCb4 of LHC-II complex 0.03 Archaeplastida
LOC_Os07g37550.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
LOC_Os07g38960.1 No alias component LHCa2 of LHC-I complex 0.03 Archaeplastida
LOC_Os09g26810.1 No alias component LHCa6 of LHC-I complex 0.02 Archaeplastida
LOC_Os11g13890.1 No alias component LHCb5 of LHC-II complex 0.03 Archaeplastida
MA_10431300g0010 No alias Chlorophyll a-b binding protein type I, chloroplastic... 0.03 Archaeplastida
MA_131587g0010 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.03 Archaeplastida
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Mp4g00930.1 No alias component LHCa3 of LHC-I complex 0.03 Archaeplastida
Mp4g10900.1 No alias component LHCb5 of LHC-II complex 0.03 Archaeplastida
Mp6g01650.1 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.04 Archaeplastida
Pp3c10_25360V3.1 No alias photosystem I light harvesting complex gene 2 0.04 Archaeplastida
Pp3c10_25450V3.1 No alias photosystem I light harvesting complex gene 2 0.02 Archaeplastida
Pp3c10_3020V3.1 No alias photosystem II light harvesting complex gene 2.3 0.04 Archaeplastida
Pp3c12_19200V3.1 No alias photosystem I light harvesting complex gene 2 0.03 Archaeplastida
Pp3c12_25430V3.1 No alias light harvesting complex photosystem II 0.02 Archaeplastida
Pp3c12_25460V3.1 No alias light harvesting complex photosystem II 0.03 Archaeplastida
Pp3c13_14980V3.1 No alias photosystem I light harvesting complex gene 1 0.04 Archaeplastida
Pp3c13_7900V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c16_16040V3.1 No alias photosystem I light harvesting complex gene 3 0.03 Archaeplastida
Pp3c19_20900V3.1 No alias light-harvesting chlorophyll B-binding protein 3 0.03 Archaeplastida
Pp3c1_34210V3.1 No alias light harvesting complex photosystem II subunit 6 0.02 Archaeplastida
Pp3c20_23240V3.1 No alias photosystem I light harvesting complex gene 2 0.03 Archaeplastida
Pp3c21_3950V3.1 No alias photosystem II light harvesting complex gene 2.1 0.06 Archaeplastida
Pp3c22_5610V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c26_12230V3.1 No alias light harvesting complex of photosystem II 5 0.02 Archaeplastida
Pp3c26_12240V3.1 No alias light harvesting complex of photosystem II 5 0.04 Archaeplastida
Pp3c26_6740V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c27_7020V3.1 No alias photosystem I light harvesting complex gene 3 0.02 Archaeplastida
Pp3c2_35930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 Archaeplastida
Pp3c2_36190V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c2_36380V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c2_36500V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c3_12510V3.1 No alias photosystem I light harvesting complex gene 1 0.02 Archaeplastida
Pp3c3_4100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c4_11854V3.1 No alias photosystem I light harvesting complex gene 5 0.02 Archaeplastida
Pp3c4_29150V3.1 No alias photosystem I light harvesting complex gene 1 0.05 Archaeplastida
Pp3c4_29270V3.1 No alias photosystem I light harvesting complex gene 1 0.05 Archaeplastida
Pp3c4_5680V3.1 No alias light harvesting complex photosystem II 0.03 Archaeplastida
Pp3c4_5690V3.1 No alias light harvesting complex photosystem II 0.03 Archaeplastida
Pp3c5_7150V3.1 No alias photosystem II light harvesting complex gene 2.1 0.04 Archaeplastida
Pp3c6_22090V3.1 No alias photosystem I light harvesting complex gene 3 0.02 Archaeplastida
Pp3c6_6830V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Solyc01g105030.3.1 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida
Solyc01g105050.3.1 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida
Solyc02g070940.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Solyc02g070950.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Solyc02g071010.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Solyc02g071030.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Solyc03g005770.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Solyc03g115900.4.1 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Solyc05g056050.3.1 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
Solyc06g063370.3.1 No alias component LHCb5 of LHC-II complex 0.02 Archaeplastida
Solyc08g067320.3.1 No alias Chlorophyll a-b binding protein 3A, chloroplastic... 0.02 Archaeplastida
Solyc08g067330.1.1 No alias Chlorophyll a-b binding protein 16, chloroplastic... 0.04 Archaeplastida
Solyc09g014520.3.1 No alias component LHCb4 of LHC-II complex 0.02 Archaeplastida
Solyc10g006230.3.1 No alias component LHCa2 of LHC-I complex 0.02 Archaeplastida
Solyc10g007690.3.1 No alias component LHCa3 of LHC-I complex 0.02 Archaeplastida
Solyc12g011450.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Zm00001e004129_P001 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Zm00001e004940_P001 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Zm00001e004941_P001 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Zm00001e006561_P001 No alias component LHCb6 of LHC-II complex 0.04 Archaeplastida
Zm00001e009885_P001 No alias component LHCa6 of LHC-I complex 0.04 Archaeplastida
Zm00001e011045_P002 No alias component LHCb5 of LHC-II complex 0.04 Archaeplastida
Zm00001e013742_P001 No alias component LHCa1 of LHC-I complex 0.04 Archaeplastida
Zm00001e021290_P001 No alias component LHCb5 of LHC-II complex 0.02 Archaeplastida
Zm00001e022453_P001 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Zm00001e026547_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e032450_P001 No alias Chlorophyll a-b binding protein, chloroplastic OS=Zea... 0.04 Archaeplastida
Zm00001e034922_P001 No alias Chlorophyll a-b binding protein 1, chloroplastic OS=Zea... 0.04 Archaeplastida
Zm00001e035235_P001 No alias component LHCb4 of LHC-II complex 0.03 Archaeplastida
Zm00001e035349_P002 No alias component LHCa2 of LHC-I complex 0.04 Archaeplastida
Zm00001e041918_P001 No alias component LHCb6 of LHC-II complex 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045926 negative regulation of growth IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 70 248
No external refs found!