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  5. Smo165331

Smo165331


Description : Putative DEAD-box ATP-dependent RNA helicase 29 OS=Arabidopsis thaliana


Gene families : OG0005027 (Archaeplastida) Phylogenetic Tree(s): OG0005027_tree ,
OG_05_0007229 (LandPlants) Phylogenetic Tree(s): OG_05_0007229_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo165331
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AT1G77030 No alias hydrolases, acting on acid anhydrides, in... 0.08 Archaeplastida
Cpa|evm.model.tig00022075.32 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.03 Archaeplastida
Cre12.g513701 No alias DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.04 Archaeplastida
GSVIVT01009983001 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.04 Archaeplastida
Gb_13284 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.04 Archaeplastida
LOC_Os08g32090.1 No alias DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.02 Archaeplastida
Mp7g18590.1 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.03 Archaeplastida
Pp3c14_6810V3.1 No alias hydrolases, acting on acid anhydrides, in... 0.02 Archaeplastida
Solyc10g009070.3.1 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.02 Archaeplastida
Zm00001e022381_P001 No alias DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.06 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008375 acetylglucosaminyltransferase activity IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR012541 DBP10_C 627 688
No external refs found!