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  5. Smo165708

Smo165708


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL23 component


Gene families : OG0001339 (Archaeplastida) Phylogenetic Tree(s): OG0001339_tree ,
OG_05_0001717 (LandPlants) Phylogenetic Tree(s): OG_05_0001717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo165708
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00206470 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
AT1G04480 No alias Ribosomal protein L14p/L23e family protein 0.15 Archaeplastida
AT2G33370 No alias Ribosomal protein L14p/L23e family protein 0.14 Archaeplastida
AT3G04400 emb2171 Ribosomal protein L14p/L23e family protein 0.19 Archaeplastida
Cpa|evm.model.tig00021290.9 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
Cre04.g211800 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
GSVIVT01027905001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
GSVIVT01028407001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
Gb_21541 No alias component RPL23 of LSU proteome component 0.07 Archaeplastida
LOC_Os02g56960.1 No alias component RPL23 of LSU proteome component 0.12 Archaeplastida
LOC_Os03g04590.1 No alias component RPL23 of LSU proteome component 0.11 Archaeplastida
LOC_Os10g32920.1 No alias component RPL23 of LSU proteome component 0.1 Archaeplastida
MA_10429866g0030 No alias 60S ribosomal protein L23 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_10432200g0010 No alias component RPL23 of LSU proteome component 0.14 Archaeplastida
MA_950121g0010 No alias component RPL23 of LSU proteome component 0.09 Archaeplastida
Mp5g05580.1 No alias component RPL23 of LSU proteome component 0.02 Archaeplastida
Mp6g14310.1 No alias component RPL23 of LSU proteome component 0.05 Archaeplastida
Pp3c16_13640V3.1 No alias Ribosomal protein L14p/L23e family protein 0.14 Archaeplastida
Pp3c24_8570V3.1 No alias Ribosomal protein L14p/L23e family protein 0.1 Archaeplastida
Pp3c27_860V3.1 No alias Ribosomal protein L14p/L23e family protein 0.11 Archaeplastida
Pp3c8_12080V3.1 No alias Ribosomal protein L14p/L23e family protein 0.03 Archaeplastida
Pp3c8_16130V3.1 No alias Ribosomal protein L14p/L23e family protein 0.13 Archaeplastida
Solyc06g008170.3.1 No alias component RPL23 of LSU proteome component 0.09 Archaeplastida
Solyc06g083780.3.1 No alias component RPL23 of LSU proteome component 0.12 Archaeplastida
Solyc09g072865.1.1 No alias component RPL23 of LSU proteome component 0.09 Archaeplastida
Solyc09g090610.3.1 No alias component RPL23 of LSU proteome component 0.08 Archaeplastida
Zm00001e000323_P001 No alias component RPL23 of LSU proteome component 0.1 Archaeplastida
Zm00001e012721_P001 No alias component RPL23 of LSU proteome component 0.06 Archaeplastida
Zm00001e023614_P001 No alias component RPL23 of LSU proteome component 0.12 Archaeplastida
Zm00001e038953_P001 No alias component RPL23 of LSU proteome component 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
CC GO:0034998 oligosaccharyltransferase I complex IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000218 Ribosomal_L14P 22 140
No external refs found!