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  5. AMTR_s00013p00241000

AMTR_s00013p00241000 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00013.199

Description : Solute transport.carrier-mediated transport.BART superfamily.AEC family.auxin efflux transporter (PIN-type)


Gene families : OG0000353 (Archaeplastida) Phylogenetic Tree(s): OG0000353_tree ,
OG_05_0000237 (LandPlants) Phylogenetic Tree(s): OG_05_0000237_tree ,
OG_06_0007023 (SeedPlants) Phylogenetic Tree(s): OG_06_0007023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00013p00241000
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00149240 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.BART... 0.03 Archaeplastida
AT1G23080 PIN7, ATPIN7 Auxin efflux carrier family protein 0.05 Archaeplastida
AT1G77110 PIN6 Auxin efflux carrier family protein 0.03 Archaeplastida
AT5G57090 EIR1, WAV6,... Auxin efflux carrier family protein 0.03 Archaeplastida
GSVIVT01029266001 No alias Solute transport.carrier-mediated transport.BART... 0.03 Archaeplastida
GSVIVT01031663001 No alias Solute transport.carrier-mediated transport.BART... 0.03 Archaeplastida
Gb_03018 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os01g69070.1 No alias auxin transporter (PIN). auxin efflux transporter (PIN) 0.05 Archaeplastida
LOC_Os06g12610.1 No alias auxin transporter (PIN). auxin efflux transporter (PIN) 0.03 Archaeplastida
LOC_Os06g44970.1 No alias auxin transporter (PIN). auxin efflux transporter (PIN) 0.02 Archaeplastida
LOC_Os12g04000.1 No alias auxin transporter (PIN). auxin efflux transporter (PIN) 0.02 Archaeplastida
Mp5g05150.1 No alias auxin transporter (PIN). auxin efflux transporter (PIN) 0.03 Archaeplastida
Pp3c10_24880V3.1 No alias Auxin efflux carrier family protein 0.02 Archaeplastida
Pp3c23_10200V3.1 No alias Auxin efflux carrier family protein 0.02 Archaeplastida
Smo102666 No alias Solute transport.carrier-mediated transport.BART... 0.04 Archaeplastida
Smo119024 No alias Solute transport.carrier-mediated transport.BART... 0.02 Archaeplastida
Smo99301 No alias Solute transport.carrier-mediated transport.BART... 0.02 Archaeplastida
Solyc07g006900.2.1 No alias auxin transporter (PIN). auxin efflux transporter (PIN) 0.02 Archaeplastida
Zm00001e018835_P004 No alias auxin transporter (PIN). auxin efflux transporter (PIN) 0.07 Archaeplastida
Zm00001e020346_P002 No alias auxin transporter (PIN). auxin efflux transporter (PIN) 0.02 Archaeplastida
Zm00001e024071_P002 No alias auxin transporter (PIN). auxin efflux transporter (PIN) 0.03 Archaeplastida
Zm00001e037682_P001 No alias auxin transporter (PIN). auxin efflux transporter (PIN) 0.06 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
InterPro domains Description Start Stop
IPR004776 Mem_trans 10 358
No external refs found!